MotifDMTA2.H12INVIVO.0.SM.D
Gene (human)DMRTA2
(GeneCards)
Gene synonyms (human)DMRT5
Gene (mouse)Dmrta2
Gene synonyms (mouse)Dmrt5
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length16
ConsensusnhhRhTGTAWCddhhn
GC content35.32%
Information content (bits; total / per base)11.955 / 0.747
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9246

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.987 0.977 0.974 0.961 0.939 0.921
best 0.987 0.979 0.975 0.961 0.946 0.927
Methyl HT-SELEX, 1 experiments median 0.986 0.976 0.975 0.961 0.946 0.927
best 0.986 0.976 0.975 0.961 0.946 0.927
Non-Methyl HT-SELEX, 1 experiments median 0.987 0.979 0.973 0.96 0.933 0.915
best 0.987 0.979 0.973 0.96 0.933 0.915
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classDM-type intertwined zinc finger factors {2.5} (TFClass)
TF familyDMRT {2.5.1} (TFClass)
TF subfamily {2.5.1.0} (TFClass)
TFClass IDTFClass: 2.5.1.0.5
HGNCHGNC:13908
MGIMGI:2653629
EntrezGene (human)GeneID:63950
(SSTAR profile)
EntrezGene (mouse)GeneID:242620
(SSTAR profile)
UniProt ID (human)DMTA2_HUMAN
UniProt ID (mouse)DMTA2_MOUSE
UniProt AC (human)Q96SC8
(TFClass)
UniProt AC (mouse)A2A9A2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012508.751657.752870.752208.75
024258.51830.51435.51721.5
032488.04129.01036.01593.0
047384.0653.0677.0532.0
054708.01822.0300.02416.0
06594.08.09.08635.0
070.00.09246.00.0
080.00.00.09246.0
097349.020.018.01859.0
104293.08.01786.03159.0
1118.09131.056.041.0
125065.0972.02163.01046.0
134718.0978.01291.02259.0
141852.01762.01108.04524.0
152015.751622.751422.754184.75
161616.52203.52041.53384.5
PFM
ACGT
010.2710.1790.310.239
020.4610.1980.1550.186
030.2690.4470.1120.172
040.7990.0710.0730.058
050.5090.1970.0320.261
060.0640.0010.0010.934
070.00.01.00.0
080.00.00.01.0
090.7950.0020.0020.201
100.4640.0010.1930.342
110.0020.9880.0060.004
120.5480.1050.2340.113
130.510.1060.140.244
140.20.1910.120.489
150.2180.1760.1540.453
160.1750.2380.2210.366
PWM
ACGT
010.082-0.3320.216-0.045
020.611-0.233-0.476-0.294
030.0740.58-0.801-0.372
041.161-1.262-1.226-1.466
050.711-0.238-2.0350.044
06-1.356-5.416-5.3231.317
07-6.921-6.9211.386-6.921
08-6.921-6.921-6.9211.386
091.156-4.643-4.737-0.218
100.619-5.416-0.2580.312
11-4.7371.373-3.681-3.979
120.784-0.865-0.066-0.792
130.713-0.859-0.582-0.023
14-0.221-0.271-0.7340.671
15-0.137-0.353-0.4850.593
16-0.357-0.048-0.1240.381
Standard thresholds
P-value Threshold
0.001 3.98186
0.0005 5.26496
0.0001 7.45571