Motif | DMRTD.H12RSNP.0.SM.D |
Gene (human) | DMRTC2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Dmrtc2 |
Gene synonyms (mouse) | Dmrt7 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | DMRTD.H12RSNP.0.SM.D |
Gene (human) | DMRTC2 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Dmrtc2 |
Gene synonyms (mouse) | Dmrt7 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 14 |
Consensus | nvdWWYGMTACAWb |
GC content | 32.1% |
Information content (bits; total / per base) | 13.541 / 0.967 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 7329 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.986 | 0.982 | 0.943 | 0.93 | 0.841 | 0.835 |
best | 0.995 | 0.993 | 0.953 | 0.945 | 0.852 | 0.84 | |
Methyl HT-SELEX, 2 experiments | median | 0.99 | 0.988 | 0.921 | 0.913 | 0.79 | 0.796 |
best | 0.995 | 0.993 | 0.953 | 0.945 | 0.837 | 0.836 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.986 | 0.982 | 0.943 | 0.93 | 0.848 | 0.837 |
best | 0.987 | 0.983 | 0.946 | 0.932 | 0.852 | 0.84 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | DM-type intertwined zinc finger factors {2.5} (TFClass) |
TF family | DMRT {2.5.1} (TFClass) |
TF subfamily | {2.5.1.0} (TFClass) |
TFClass ID | TFClass: 2.5.1.0.7 |
HGNC | HGNC:13911 |
MGI | MGI:1918491 |
EntrezGene (human) | GeneID:63946 (SSTAR profile) |
EntrezGene (mouse) | GeneID:71241 (SSTAR profile) |
UniProt ID (human) | DMRTD_HUMAN |
UniProt ID (mouse) | DMRTD_MOUSE |
UniProt AC (human) | Q8IXT2 (TFClass) |
UniProt AC (mouse) | Q8CGW9 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | DMRTD.H12RSNP.0.SM.D.pcm |
PWM | DMRTD.H12RSNP.0.SM.D.pwm |
PFM | DMRTD.H12RSNP.0.SM.D.pfm |
Alignment | DMRTD.H12RSNP.0.SM.D.words.tsv |
Threshold to P-value map | DMRTD.H12RSNP.0.SM.D.thr |
Motif in other formats | |
JASPAR format | DMRTD.H12RSNP.0.SM.D_jaspar_format.txt |
MEME format | DMRTD.H12RSNP.0.SM.D_meme_format.meme |
Transfac format | DMRTD.H12RSNP.0.SM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2123.0 | 1990.0 | 1608.0 | 1608.0 |
02 | 3711.0 | 1349.0 | 1270.0 | 999.0 |
03 | 4098.0 | 939.0 | 978.0 | 1314.0 |
04 | 4542.0 | 602.0 | 701.0 | 1484.0 |
05 | 1336.0 | 398.0 | 356.0 | 5239.0 |
06 | 120.0 | 1215.0 | 369.0 | 5625.0 |
07 | 0.0 | 7.0 | 7318.0 | 4.0 |
08 | 4883.0 | 1740.0 | 1.0 | 705.0 |
09 | 117.0 | 94.0 | 30.0 | 7088.0 |
10 | 7328.0 | 1.0 | 0.0 | 0.0 |
11 | 1.0 | 7328.0 | 0.0 | 0.0 |
12 | 7002.0 | 46.0 | 95.0 | 186.0 |
13 | 1199.25 | 954.25 | 687.25 | 4488.25 |
14 | 1154.25 | 1608.25 | 1247.25 | 3319.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.29 | 0.272 | 0.219 | 0.219 |
02 | 0.506 | 0.184 | 0.173 | 0.136 |
03 | 0.559 | 0.128 | 0.133 | 0.179 |
04 | 0.62 | 0.082 | 0.096 | 0.202 |
05 | 0.182 | 0.054 | 0.049 | 0.715 |
06 | 0.016 | 0.166 | 0.05 | 0.767 |
07 | 0.0 | 0.001 | 0.998 | 0.001 |
08 | 0.666 | 0.237 | 0.0 | 0.096 |
09 | 0.016 | 0.013 | 0.004 | 0.967 |
10 | 1.0 | 0.0 | 0.0 | 0.0 |
11 | 0.0 | 1.0 | 0.0 | 0.0 |
12 | 0.955 | 0.006 | 0.013 | 0.025 |
13 | 0.164 | 0.13 | 0.094 | 0.612 |
14 | 0.157 | 0.219 | 0.17 | 0.453 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.147 | 0.082 | -0.13 | -0.13 |
02 | 0.705 | -0.306 | -0.366 | -0.606 |
03 | 0.804 | -0.667 | -0.627 | -0.332 |
04 | 0.907 | -1.111 | -0.959 | -0.211 |
05 | -0.315 | -1.522 | -1.633 | 1.05 |
06 | -2.709 | -0.41 | -1.598 | 1.121 |
07 | -6.715 | -5.293 | 1.384 | -5.686 |
08 | 0.979 | -0.052 | -6.344 | -0.953 |
09 | -2.734 | -2.948 | -4.042 | 1.352 |
10 | 1.385 | -6.344 | -6.715 | -6.715 |
11 | -6.344 | 1.385 | -6.715 | -6.715 |
12 | 1.34 | -3.639 | -2.937 | -2.277 |
13 | -0.423 | -0.651 | -0.979 | 0.895 |
14 | -0.461 | -0.13 | -0.384 | 0.594 |
P-value | Threshold |
---|---|
0.001 | 3.01221 |
0.0005 | 4.39781 |
0.0001 | 7.06891 |