MotifDMRTD.H12INVIVO.0.SM.D
Gene (human)DMRTC2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Dmrtc2
Gene synonyms (mouse)Dmrt7
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length14
ConsensusnvdWWYGMTACAWb
GC content32.1%
Information content (bits; total / per base)13.541 / 0.967
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words7329

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.986 0.982 0.943 0.93 0.841 0.835
best 0.995 0.993 0.953 0.945 0.852 0.84
Methyl HT-SELEX, 2 experiments median 0.99 0.988 0.921 0.913 0.79 0.796
best 0.995 0.993 0.953 0.945 0.837 0.836
Non-Methyl HT-SELEX, 2 experiments median 0.986 0.982 0.943 0.93 0.848 0.837
best 0.987 0.983 0.946 0.932 0.852 0.84
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classDM-type intertwined zinc finger factors {2.5} (TFClass)
TF familyDMRT {2.5.1} (TFClass)
TF subfamily {2.5.1.0} (TFClass)
TFClass IDTFClass: 2.5.1.0.7
HGNCHGNC:13911
MGIMGI:1918491
EntrezGene (human)GeneID:63946
(SSTAR profile)
EntrezGene (mouse)GeneID:71241
(SSTAR profile)
UniProt ID (human)DMRTD_HUMAN
UniProt ID (mouse)DMRTD_MOUSE
UniProt AC (human)Q8IXT2
(TFClass)
UniProt AC (mouse)Q8CGW9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
012123.01990.01608.01608.0
023711.01349.01270.0999.0
034098.0939.0978.01314.0
044542.0602.0701.01484.0
051336.0398.0356.05239.0
06120.01215.0369.05625.0
070.07.07318.04.0
084883.01740.01.0705.0
09117.094.030.07088.0
107328.01.00.00.0
111.07328.00.00.0
127002.046.095.0186.0
131199.25954.25687.254488.25
141154.251608.251247.253319.25
PFM
ACGT
010.290.2720.2190.219
020.5060.1840.1730.136
030.5590.1280.1330.179
040.620.0820.0960.202
050.1820.0540.0490.715
060.0160.1660.050.767
070.00.0010.9980.001
080.6660.2370.00.096
090.0160.0130.0040.967
101.00.00.00.0
110.01.00.00.0
120.9550.0060.0130.025
130.1640.130.0940.612
140.1570.2190.170.453
PWM
ACGT
010.1470.082-0.13-0.13
020.705-0.306-0.366-0.606
030.804-0.667-0.627-0.332
040.907-1.111-0.959-0.211
05-0.315-1.522-1.6331.05
06-2.709-0.41-1.5981.121
07-6.715-5.2931.384-5.686
080.979-0.052-6.344-0.953
09-2.734-2.948-4.0421.352
101.385-6.344-6.715-6.715
11-6.3441.385-6.715-6.715
121.34-3.639-2.937-2.277
13-0.423-0.651-0.9790.895
14-0.461-0.13-0.3840.594
Standard thresholds
P-value Threshold
0.001 3.01221
0.0005 4.39781
0.0001 7.06891