DMRTB.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	DMRTB.H12RSNP.0.P.D
Gene (human)	DMRTB1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Dmrtb1
Gene synonyms (mouse)	Dmrt6
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	dGhWACAAWGTWdChv
GC content	39.78%
Information content (bits; total / per base)	14.933 / 0.933
Data sources	ChIP-Seq
Aligned words	978

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	1 (7)	0.902	0.935	0.896	0.926	0.913	0.942	6.23	6.487	287.398	344.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	DM-type intertwined zinc finger factors {2.5} (TFClass)
TF family	DMRT {2.5.1} (TFClass)
TF subfamily	{2.5.1.0} (TFClass)
TFClass ID	TFClass: 2.5.1.0.6
HGNC	HGNC:13913
MGI	MGI:1927125
EntrezGene (human)	GeneID:63948 (SSTAR profile)
EntrezGene (mouse)	GeneID:56296 (SSTAR profile)
UniProt ID (human)	DMRTB_HUMAN
UniProt ID (mouse)	DMRTB_MOUSE
UniProt AC (human)	Q96MA1 (TFClass)
UniProt AC (mouse)	A2A9I7 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	DMRTB.H12RSNP.0.P.D.pcm
PWM	DMRTB.H12RSNP.0.P.D.pwm
PFM	DMRTB.H12RSNP.0.P.D.pfm
Alignment	DMRTB.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	DMRTB.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	DMRTB.H12RSNP.0.P.D_jaspar_format.txt
MEME format	DMRTB.H12RSNP.0.P.D_meme_format.meme
Transfac format	DMRTB.H12RSNP.0.P.D_transfac_format.txt
Homer format	DMRTB.H12RSNP.0.P.D_homer_format_0.001.txt DMRTB.H12RSNP.0.P.D_homer_format_0.0005.txt DMRTB.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	277.0	54.0	308.0	339.0
02	46.0	43.0	852.0	37.0
03	423.0	330.0	23.0	202.0
04	260.0	98.0	58.0	562.0
05	927.0	24.0	8.0	19.0
06	42.0	893.0	25.0	18.0
07	839.0	19.0	8.0	112.0
08	754.0	223.0	1.0	0.0
09	286.0	6.0	22.0	664.0
10	19.0	21.0	932.0	6.0
11	23.0	8.0	10.0	937.0
12	614.0	26.0	105.0	233.0
13	227.0	18.0	393.0	340.0
14	31.0	906.0	16.0	25.0
15	401.0	309.0	50.0	218.0
16	411.0	183.0	253.0	131.0

PFM

	A	C	G	T
01	0.283	0.055	0.315	0.347
02	0.047	0.044	0.871	0.038
03	0.433	0.337	0.024	0.207
04	0.266	0.1	0.059	0.575
05	0.948	0.025	0.008	0.019
06	0.043	0.913	0.026	0.018
07	0.858	0.019	0.008	0.115
08	0.771	0.228	0.001	0.0
09	0.292	0.006	0.022	0.679
10	0.019	0.021	0.953	0.006
11	0.024	0.008	0.01	0.958
12	0.628	0.027	0.107	0.238
13	0.232	0.018	0.402	0.348
14	0.032	0.926	0.016	0.026
15	0.41	0.316	0.051	0.223
16	0.42	0.187	0.259	0.134

PWM

	A	C	G	T
01	0.124	-1.486	0.229	0.325
02	-1.641	-1.706	1.243	-1.85
03	0.545	0.298	-2.299	-0.189
04	0.061	-0.904	-1.417	0.828
05	1.328	-2.259	-3.232	-2.475
06	-1.728	1.29	-2.221	-2.525
07	1.228	-2.475	-3.232	-0.772
08	1.121	-0.091	-4.505	-4.963
09	0.156	-3.462	-2.34	0.995
10	-2.475	-2.383	1.333	-3.462
11	-2.299	-3.232	-3.045	1.338
12	0.917	-2.184	-0.836	-0.048
13	-0.074	-2.525	0.472	0.328
14	-2.018	1.305	-2.631	-2.221
15	0.492	0.233	-1.56	-0.114
16	0.517	-0.287	0.034	-0.618

Standard thresholds

P-value	Threshold
0.001	3.04636
0.0005	4.19026
0.0001	6.57351