MotifDMRTB.H12INVITRO.0.P.D
Gene (human)DMRTB1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Dmrtb1
Gene synonyms (mouse)Dmrt6
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length16
ConsensusdGhWACAAWGTWdChv
GC content39.78%
Information content (bits; total / per base)14.933 / 0.933
Data sourcesChIP-Seq
Aligned words978

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.902 0.935 0.896 0.926 0.913 0.942 6.23 6.487 287.398 344.509
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classDM-type intertwined zinc finger factors {2.5} (TFClass)
TF familyDMRT {2.5.1} (TFClass)
TF subfamily {2.5.1.0} (TFClass)
TFClass IDTFClass: 2.5.1.0.6
HGNCHGNC:13913
MGIMGI:1927125
EntrezGene (human)GeneID:63948
(SSTAR profile)
EntrezGene (mouse)GeneID:56296
(SSTAR profile)
UniProt ID (human)DMRTB_HUMAN
UniProt ID (mouse)DMRTB_MOUSE
UniProt AC (human)Q96MA1
(TFClass)
UniProt AC (mouse)A2A9I7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01277.054.0308.0339.0
0246.043.0852.037.0
03423.0330.023.0202.0
04260.098.058.0562.0
05927.024.08.019.0
0642.0893.025.018.0
07839.019.08.0112.0
08754.0223.01.00.0
09286.06.022.0664.0
1019.021.0932.06.0
1123.08.010.0937.0
12614.026.0105.0233.0
13227.018.0393.0340.0
1431.0906.016.025.0
15401.0309.050.0218.0
16411.0183.0253.0131.0
PFM
ACGT
010.2830.0550.3150.347
020.0470.0440.8710.038
030.4330.3370.0240.207
040.2660.10.0590.575
050.9480.0250.0080.019
060.0430.9130.0260.018
070.8580.0190.0080.115
080.7710.2280.0010.0
090.2920.0060.0220.679
100.0190.0210.9530.006
110.0240.0080.010.958
120.6280.0270.1070.238
130.2320.0180.4020.348
140.0320.9260.0160.026
150.410.3160.0510.223
160.420.1870.2590.134
PWM
ACGT
010.124-1.4860.2290.325
02-1.641-1.7061.243-1.85
030.5450.298-2.299-0.189
040.061-0.904-1.4170.828
051.328-2.259-3.232-2.475
06-1.7281.29-2.221-2.525
071.228-2.475-3.232-0.772
081.121-0.091-4.505-4.963
090.156-3.462-2.340.995
10-2.475-2.3831.333-3.462
11-2.299-3.232-3.0451.338
120.917-2.184-0.836-0.048
13-0.074-2.5250.4720.328
14-2.0181.305-2.631-2.221
150.4920.233-1.56-0.114
160.517-0.2870.034-0.618
Standard thresholds
P-value Threshold
0.001 3.04636
0.0005 4.19026
0.0001 6.57351