Motif | DMRTA.H12RSNP.0.SM.D |
Gene (human) | DMRTA1 (GeneCards) |
Gene synonyms (human) | DMO |
Gene (mouse) | Dmrta1 |
Gene synonyms (mouse) | Dmrt4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | DMRTA.H12RSNP.0.SM.D |
Gene (human) | DMRTA1 (GeneCards) |
Gene synonyms (human) | DMO |
Gene (mouse) | Dmrta1 |
Gene synonyms (mouse) | Dmrt4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 16 |
Consensus | nhAWTGTAWCRWWdbn |
GC content | 31.34% |
Information content (bits; total / per base) | 13.999 / 0.875 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9637 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.997 | 0.996 | 0.989 | 0.985 | 0.917 | 0.915 |
best | 0.998 | 0.997 | 0.993 | 0.991 | 0.917 | 0.92 | |
Methyl HT-SELEX, 1 experiments | median | 0.998 | 0.997 | 0.993 | 0.991 | 0.917 | 0.92 |
best | 0.998 | 0.997 | 0.993 | 0.991 | 0.917 | 0.92 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.996 | 0.994 | 0.984 | 0.978 | 0.917 | 0.911 |
best | 0.996 | 0.994 | 0.984 | 0.978 | 0.917 | 0.911 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | DM-type intertwined zinc finger factors {2.5} (TFClass) |
TF family | DMRT {2.5.1} (TFClass) |
TF subfamily | {2.5.1.0} (TFClass) |
TFClass ID | TFClass: 2.5.1.0.4 |
HGNC | HGNC:13826 |
MGI | MGI:2653627 |
EntrezGene (human) | GeneID:63951 (SSTAR profile) |
EntrezGene (mouse) | GeneID:242523 (SSTAR profile) |
UniProt ID (human) | DMRTA_HUMAN |
UniProt ID (mouse) | DMRTA_MOUSE |
UniProt AC (human) | Q5VZB9 (TFClass) |
UniProt AC (mouse) | Q8CFG4 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | DMRTA.H12RSNP.0.SM.D.pcm |
PWM | DMRTA.H12RSNP.0.SM.D.pwm |
PFM | DMRTA.H12RSNP.0.SM.D.pfm |
Alignment | DMRTA.H12RSNP.0.SM.D.words.tsv |
Threshold to P-value map | DMRTA.H12RSNP.0.SM.D.thr |
Motif in other formats | |
JASPAR format | DMRTA.H12RSNP.0.SM.D_jaspar_format.txt |
MEME format | DMRTA.H12RSNP.0.SM.D_meme_format.meme |
Transfac format | DMRTA.H12RSNP.0.SM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 3595.25 | 2252.25 | 1637.25 | 2152.25 |
02 | 3429.0 | 3230.0 | 1191.0 | 1787.0 |
03 | 7994.0 | 522.0 | 600.0 | 521.0 |
04 | 5807.0 | 1769.0 | 209.0 | 1852.0 |
05 | 611.0 | 39.0 | 2.0 | 8985.0 |
06 | 1.0 | 0.0 | 9635.0 | 1.0 |
07 | 1.0 | 0.0 | 0.0 | 9636.0 |
08 | 7920.0 | 1.0 | 9.0 | 1707.0 |
09 | 5899.0 | 3.0 | 1382.0 | 2353.0 |
10 | 10.0 | 9615.0 | 8.0 | 4.0 |
11 | 7697.0 | 408.0 | 1119.0 | 413.0 |
12 | 6751.0 | 533.0 | 951.0 | 1402.0 |
13 | 2028.0 | 1233.0 | 656.0 | 5720.0 |
14 | 1822.0 | 1181.0 | 1248.0 | 5386.0 |
15 | 1173.75 | 1945.75 | 1787.75 | 4729.75 |
16 | 1920.0 | 2447.0 | 2708.0 | 2562.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.373 | 0.234 | 0.17 | 0.223 |
02 | 0.356 | 0.335 | 0.124 | 0.185 |
03 | 0.83 | 0.054 | 0.062 | 0.054 |
04 | 0.603 | 0.184 | 0.022 | 0.192 |
05 | 0.063 | 0.004 | 0.0 | 0.932 |
06 | 0.0 | 0.0 | 1.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 1.0 |
08 | 0.822 | 0.0 | 0.001 | 0.177 |
09 | 0.612 | 0.0 | 0.143 | 0.244 |
10 | 0.001 | 0.998 | 0.001 | 0.0 |
11 | 0.799 | 0.042 | 0.116 | 0.043 |
12 | 0.701 | 0.055 | 0.099 | 0.145 |
13 | 0.21 | 0.128 | 0.068 | 0.594 |
14 | 0.189 | 0.123 | 0.13 | 0.559 |
15 | 0.122 | 0.202 | 0.186 | 0.491 |
16 | 0.199 | 0.254 | 0.281 | 0.266 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.4 | -0.067 | -0.386 | -0.113 |
02 | 0.353 | 0.293 | -0.704 | -0.298 |
03 | 1.199 | -1.526 | -1.387 | -1.528 |
04 | 0.879 | -0.309 | -2.435 | -0.263 |
05 | -1.369 | -4.067 | -6.331 | 1.316 |
06 | -6.596 | -6.958 | 1.385 | -6.596 |
07 | -6.596 | -6.958 | -6.958 | 1.385 |
08 | 1.189 | -6.596 | -5.364 | -0.344 |
09 | 0.895 | -6.122 | -0.555 | -0.024 |
10 | -5.279 | 1.383 | -5.457 | -5.949 |
11 | 1.161 | -1.771 | -0.766 | -1.759 |
12 | 1.03 | -1.505 | -0.928 | -0.541 |
13 | -0.172 | -0.669 | -1.298 | 0.864 |
14 | -0.279 | -0.712 | -0.657 | 0.804 |
15 | -0.718 | -0.213 | -0.298 | 0.674 |
16 | -0.227 | 0.016 | 0.117 | 0.061 |
P-value | Threshold |
---|---|
0.001 | 2.78131 |
0.0005 | 4.27101 |
0.0001 | 6.94981 |