MotifDMRTA.H12INVITRO.0.SM.B
Gene (human)DMRTA1
(GeneCards)
Gene synonyms (human)DMO
Gene (mouse)Dmrta1
Gene synonyms (mouse)Dmrt4
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length16
ConsensusnhAWTGTAWCRWWdbn
GC content31.34%
Information content (bits; total / per base)13.999 / 0.875
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9637

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.997 0.996 0.989 0.985 0.917 0.915
best 0.998 0.997 0.993 0.991 0.917 0.92
Methyl HT-SELEX, 1 experiments median 0.998 0.997 0.993 0.991 0.917 0.92
best 0.998 0.997 0.993 0.991 0.917 0.92
Non-Methyl HT-SELEX, 1 experiments median 0.996 0.994 0.984 0.978 0.917 0.911
best 0.996 0.994 0.984 0.978 0.917 0.911
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classDM-type intertwined zinc finger factors {2.5} (TFClass)
TF familyDMRT {2.5.1} (TFClass)
TF subfamily {2.5.1.0} (TFClass)
TFClass IDTFClass: 2.5.1.0.4
HGNCHGNC:13826
MGIMGI:2653627
EntrezGene (human)GeneID:63951
(SSTAR profile)
EntrezGene (mouse)GeneID:242523
(SSTAR profile)
UniProt ID (human)DMRTA_HUMAN
UniProt ID (mouse)DMRTA_MOUSE
UniProt AC (human)Q5VZB9
(TFClass)
UniProt AC (mouse)Q8CFG4
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
013595.252252.251637.252152.25
023429.03230.01191.01787.0
037994.0522.0600.0521.0
045807.01769.0209.01852.0
05611.039.02.08985.0
061.00.09635.01.0
071.00.00.09636.0
087920.01.09.01707.0
095899.03.01382.02353.0
1010.09615.08.04.0
117697.0408.01119.0413.0
126751.0533.0951.01402.0
132028.01233.0656.05720.0
141822.01181.01248.05386.0
151173.751945.751787.754729.75
161920.02447.02708.02562.0
PFM
ACGT
010.3730.2340.170.223
020.3560.3350.1240.185
030.830.0540.0620.054
040.6030.1840.0220.192
050.0630.0040.00.932
060.00.01.00.0
070.00.00.01.0
080.8220.00.0010.177
090.6120.00.1430.244
100.0010.9980.0010.0
110.7990.0420.1160.043
120.7010.0550.0990.145
130.210.1280.0680.594
140.1890.1230.130.559
150.1220.2020.1860.491
160.1990.2540.2810.266
PWM
ACGT
010.4-0.067-0.386-0.113
020.3530.293-0.704-0.298
031.199-1.526-1.387-1.528
040.879-0.309-2.435-0.263
05-1.369-4.067-6.3311.316
06-6.596-6.9581.385-6.596
07-6.596-6.958-6.9581.385
081.189-6.596-5.364-0.344
090.895-6.122-0.555-0.024
10-5.2791.383-5.457-5.949
111.161-1.771-0.766-1.759
121.03-1.505-0.928-0.541
13-0.172-0.669-1.2980.864
14-0.279-0.712-0.6570.804
15-0.718-0.213-0.2980.674
16-0.2270.0160.1170.061
Standard thresholds
P-value Threshold
0.001 2.78131
0.0005 4.27101
0.0001 6.94981