Motif | DMRT3.H12RSNP.0.S.C |
Gene (human) | DMRT3 (GeneCards) |
Gene synonyms (human) | DMRTA3 |
Gene (mouse) | Dmrt3 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif | DMRT3.H12RSNP.0.S.C |
Gene (human) | DMRT3 (GeneCards) |
Gene synonyms (human) | DMRTA3 |
Gene (mouse) | Dmrt3 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif length | 16 |
Consensus | nvRATGTAWCAAWWYn |
GC content | 26.45% |
Information content (bits; total / per base) | 17.415 / 1.088 |
Data sources | HT-SELEX |
Aligned words | 9964 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 1 experiments | median | 1.0 | 0.999 | 0.997 | 0.997 | 0.928 | 0.932 |
best | 1.0 | 0.999 | 0.997 | 0.997 | 0.928 | 0.932 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.661 | 0.387 | 0.762 | 0.594 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | DM-type intertwined zinc finger factors {2.5} (TFClass) |
TF family | DMRT {2.5.1} (TFClass) |
TF subfamily | {2.5.1.0} (TFClass) |
TFClass ID | TFClass: 2.5.1.0.3 |
HGNC | HGNC:13909 |
MGI | MGI:2449470 |
EntrezGene (human) | GeneID:58524 (SSTAR profile) |
EntrezGene (mouse) | GeneID:240590 (SSTAR profile) |
UniProt ID (human) | DMRT3_HUMAN |
UniProt ID (mouse) | DMRT3_MOUSE |
UniProt AC (human) | Q9NQL9 (TFClass) |
UniProt AC (mouse) | Q80WT2 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 0 |
PCM | DMRT3.H12RSNP.0.S.C.pcm |
PWM | DMRT3.H12RSNP.0.S.C.pwm |
PFM | DMRT3.H12RSNP.0.S.C.pfm |
Alignment | DMRT3.H12RSNP.0.S.C.words.tsv |
Threshold to P-value map | DMRT3.H12RSNP.0.S.C.thr |
Motif in other formats | |
JASPAR format | DMRT3.H12RSNP.0.S.C_jaspar_format.txt |
MEME format | DMRT3.H12RSNP.0.S.C_meme_format.meme |
Transfac format | DMRT3.H12RSNP.0.S.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 3206.25 | 2346.25 | 2449.25 | 1962.25 |
02 | 4660.25 | 2280.25 | 1701.25 | 1322.25 |
03 | 7955.0 | 416.0 | 918.0 | 675.0 |
04 | 8009.0 | 134.0 | 195.0 | 1626.0 |
05 | 293.0 | 11.0 | 15.0 | 9645.0 |
06 | 4.0 | 2.0 | 9958.0 | 0.0 |
07 | 4.0 | 1.0 | 2.0 | 9957.0 |
08 | 9875.0 | 1.0 | 4.0 | 84.0 |
09 | 2395.0 | 3.0 | 378.0 | 7188.0 |
10 | 11.0 | 9936.0 | 11.0 | 6.0 |
11 | 8221.0 | 470.0 | 962.0 | 311.0 |
12 | 8336.0 | 196.0 | 237.0 | 1195.0 |
13 | 2043.0 | 337.0 | 233.0 | 7351.0 |
14 | 1281.0 | 787.0 | 542.0 | 7354.0 |
15 | 860.0 | 1553.0 | 1169.0 | 6382.0 |
16 | 1872.75 | 2305.75 | 2617.75 | 3167.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.322 | 0.235 | 0.246 | 0.197 |
02 | 0.468 | 0.229 | 0.171 | 0.133 |
03 | 0.798 | 0.042 | 0.092 | 0.068 |
04 | 0.804 | 0.013 | 0.02 | 0.163 |
05 | 0.029 | 0.001 | 0.002 | 0.968 |
06 | 0.0 | 0.0 | 0.999 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 0.999 |
08 | 0.991 | 0.0 | 0.0 | 0.008 |
09 | 0.24 | 0.0 | 0.038 | 0.721 |
10 | 0.001 | 0.997 | 0.001 | 0.001 |
11 | 0.825 | 0.047 | 0.097 | 0.031 |
12 | 0.837 | 0.02 | 0.024 | 0.12 |
13 | 0.205 | 0.034 | 0.023 | 0.738 |
14 | 0.129 | 0.079 | 0.054 | 0.738 |
15 | 0.086 | 0.156 | 0.117 | 0.641 |
16 | 0.188 | 0.231 | 0.263 | 0.318 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.252 | -0.06 | -0.017 | -0.238 |
02 | 0.626 | -0.088 | -0.381 | -0.633 |
03 | 1.16 | -1.785 | -0.997 | -1.303 |
04 | 1.167 | -2.906 | -2.537 | -0.426 |
05 | -2.133 | -5.233 | -4.971 | 1.353 |
06 | -5.981 | -6.362 | 1.385 | -6.988 |
07 | -5.981 | -6.627 | -6.362 | 1.385 |
08 | 1.377 | -6.627 | -5.981 | -3.364 |
09 | -0.039 | -6.153 | -1.88 | 1.059 |
10 | -5.233 | 1.383 | -5.233 | -5.705 |
11 | 1.193 | -1.664 | -0.95 | -2.074 |
12 | 1.207 | -2.532 | -2.344 | -0.734 |
13 | -0.198 | -1.994 | -2.36 | 1.082 |
14 | -0.664 | -1.15 | -1.522 | 1.082 |
15 | -1.062 | -0.472 | -0.755 | 0.94 |
16 | -0.285 | -0.077 | 0.05 | 0.24 |
P-value | Threshold |
---|---|
0.001 | 0.42031 |
0.0005 | 2.05656 |
0.0001 | 5.42031 |