MotifDMRT3.H12INVIVO.0.S.D
Gene (human)DMRT3
(GeneCards)
Gene synonyms (human)DMRTA3
Gene (mouse)Dmrt3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length16
ConsensusnvRATGTAWCAAWWYn
GC content26.45%
Information content (bits; total / per base)17.415 / 1.088
Data sourcesHT-SELEX
Aligned words9964

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 1.0 0.999 0.997 0.997 0.928 0.932
best 1.0 0.999 0.997 0.997 0.928 0.932

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.661 0.387 0.762 0.594
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classDM-type intertwined zinc finger factors {2.5} (TFClass)
TF familyDMRT {2.5.1} (TFClass)
TF subfamily {2.5.1.0} (TFClass)
TFClass IDTFClass: 2.5.1.0.3
HGNCHGNC:13909
MGIMGI:2449470
EntrezGene (human)GeneID:58524
(SSTAR profile)
EntrezGene (mouse)GeneID:240590
(SSTAR profile)
UniProt ID (human)DMRT3_HUMAN
UniProt ID (mouse)DMRT3_MOUSE
UniProt AC (human)Q9NQL9
(TFClass)
UniProt AC (mouse)Q80WT2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
013206.252346.252449.251962.25
024660.252280.251701.251322.25
037955.0416.0918.0675.0
048009.0134.0195.01626.0
05293.011.015.09645.0
064.02.09958.00.0
074.01.02.09957.0
089875.01.04.084.0
092395.03.0378.07188.0
1011.09936.011.06.0
118221.0470.0962.0311.0
128336.0196.0237.01195.0
132043.0337.0233.07351.0
141281.0787.0542.07354.0
15860.01553.01169.06382.0
161872.752305.752617.753167.75
PFM
ACGT
010.3220.2350.2460.197
020.4680.2290.1710.133
030.7980.0420.0920.068
040.8040.0130.020.163
050.0290.0010.0020.968
060.00.00.9990.0
070.00.00.00.999
080.9910.00.00.008
090.240.00.0380.721
100.0010.9970.0010.001
110.8250.0470.0970.031
120.8370.020.0240.12
130.2050.0340.0230.738
140.1290.0790.0540.738
150.0860.1560.1170.641
160.1880.2310.2630.318
PWM
ACGT
010.252-0.06-0.017-0.238
020.626-0.088-0.381-0.633
031.16-1.785-0.997-1.303
041.167-2.906-2.537-0.426
05-2.133-5.233-4.9711.353
06-5.981-6.3621.385-6.988
07-5.981-6.627-6.3621.385
081.377-6.627-5.981-3.364
09-0.039-6.153-1.881.059
10-5.2331.383-5.233-5.705
111.193-1.664-0.95-2.074
121.207-2.532-2.344-0.734
13-0.198-1.994-2.361.082
14-0.664-1.15-1.5221.082
15-1.062-0.472-0.7550.94
16-0.285-0.0770.050.24
Standard thresholds
P-value Threshold
0.001 0.42031
0.0005 2.05656
0.0001 5.42031