Motif | DMRT1.H12RSNP.1.M.D |
Gene (human) | DMRT1 (GeneCards) |
Gene synonyms (human) | DMT1 |
Gene (mouse) | Dmrt1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif | DMRT1.H12RSNP.1.M.D |
Gene (human) | DMRT1 (GeneCards) |
Gene synonyms (human) | DMT1 |
Gene (mouse) | Dmrt1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif length | 13 |
Consensus | nhhYGYWACAWYn |
GC content | 42.7% |
Information content (bits; total / per base) | 10.479 / 0.806 |
Data sources | Methyl-HT-SELEX |
Aligned words | 718 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 1 (7) | 0.902 | 0.908 | 0.835 | 0.842 | 0.849 | 0.854 | 2.95 | 2.969 | 223.62 | 243.149 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.958 | 0.936 | 0.926 | 0.901 | 0.874 | 0.853 |
best | 0.99 | 0.982 | 0.985 | 0.975 | 0.967 | 0.954 | |
Methyl HT-SELEX, 1 experiments | median | 0.926 | 0.89 | 0.867 | 0.827 | 0.781 | 0.752 |
best | 0.926 | 0.89 | 0.867 | 0.827 | 0.781 | 0.752 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.99 | 0.982 | 0.985 | 0.975 | 0.967 | 0.954 |
best | 0.99 | 0.982 | 0.985 | 0.975 | 0.967 | 0.954 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | DM-type intertwined zinc finger factors {2.5} (TFClass) |
TF family | DMRT {2.5.1} (TFClass) |
TF subfamily | {2.5.1.0} (TFClass) |
TFClass ID | TFClass: 2.5.1.0.1 |
HGNC | HGNC:2934 |
MGI | MGI:1354733 |
EntrezGene (human) | GeneID:1761 (SSTAR profile) |
EntrezGene (mouse) | GeneID:50796 (SSTAR profile) |
UniProt ID (human) | DMRT1_HUMAN |
UniProt ID (mouse) | DMRT1_MOUSE |
UniProt AC (human) | Q9Y5R6 (TFClass) |
UniProt AC (mouse) | Q9QZ59 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 1 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | DMRT1.H12RSNP.1.M.D.pcm |
PWM | DMRT1.H12RSNP.1.M.D.pwm |
PFM | DMRT1.H12RSNP.1.M.D.pfm |
Alignment | DMRT1.H12RSNP.1.M.D.words.tsv |
Threshold to P-value map | DMRT1.H12RSNP.1.M.D.thr |
Motif in other formats | |
JASPAR format | DMRT1.H12RSNP.1.M.D_jaspar_format.txt |
MEME format | DMRT1.H12RSNP.1.M.D_meme_format.meme |
Transfac format | DMRT1.H12RSNP.1.M.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 150.25 | 268.25 | 117.25 | 182.25 |
02 | 264.0 | 210.0 | 72.0 | 172.0 |
03 | 223.0 | 82.0 | 48.0 | 365.0 |
04 | 22.0 | 475.0 | 64.0 | 157.0 |
05 | 4.0 | 56.0 | 657.0 | 1.0 |
06 | 164.0 | 379.0 | 2.0 | 173.0 |
07 | 264.0 | 3.0 | 2.0 | 449.0 |
08 | 716.0 | 2.0 | 0.0 | 0.0 |
09 | 0.0 | 718.0 | 0.0 | 0.0 |
10 | 568.0 | 34.0 | 106.0 | 10.0 |
11 | 211.0 | 66.0 | 3.0 | 438.0 |
12 | 54.75 | 158.75 | 61.75 | 442.75 |
13 | 162.5 | 161.5 | 239.5 | 154.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.209 | 0.374 | 0.163 | 0.254 |
02 | 0.368 | 0.292 | 0.1 | 0.24 |
03 | 0.311 | 0.114 | 0.067 | 0.508 |
04 | 0.031 | 0.662 | 0.089 | 0.219 |
05 | 0.006 | 0.078 | 0.915 | 0.001 |
06 | 0.228 | 0.528 | 0.003 | 0.241 |
07 | 0.368 | 0.004 | 0.003 | 0.625 |
08 | 0.997 | 0.003 | 0.0 | 0.0 |
09 | 0.0 | 1.0 | 0.0 | 0.0 |
10 | 0.791 | 0.047 | 0.148 | 0.014 |
11 | 0.294 | 0.092 | 0.004 | 0.61 |
12 | 0.076 | 0.221 | 0.086 | 0.617 |
13 | 0.226 | 0.225 | 0.334 | 0.215 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.176 | 0.399 | -0.421 | 0.015 |
02 | 0.383 | 0.156 | -0.9 | -0.042 |
03 | 0.215 | -0.773 | -1.294 | 0.705 |
04 | -2.036 | 0.967 | -1.015 | -0.133 |
05 | -3.469 | -1.145 | 1.291 | -4.227 |
06 | -0.089 | 0.743 | -3.906 | -0.037 |
07 | 0.383 | -3.664 | -3.906 | 0.911 |
08 | 1.377 | -3.906 | -4.702 | -4.702 |
09 | -4.702 | 1.379 | -4.702 | -4.702 |
10 | 1.146 | -1.626 | -0.52 | -2.744 |
11 | 0.16 | -0.985 | -3.664 | 0.887 |
12 | -1.167 | -0.122 | -1.05 | 0.897 |
13 | -0.099 | -0.105 | 0.286 | -0.149 |
P-value | Threshold |
---|---|
0.001 | 4.77246 |
0.0005 | 5.72546 |
0.0001 | 7.46152 |