Motif | DMRT1.H12RSNP.0.PS.D |
Gene (human) | DMRT1 (GeneCards) |
Gene synonyms (human) | DMT1 |
Gene (mouse) | Dmrt1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | DMRT1.H12RSNP.0.PS.D |
Gene (human) | DMRT1 (GeneCards) |
Gene synonyms (human) | DMT1 |
Gene (mouse) | Dmrt1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 16 |
Consensus | nhKGYWACAhTGTddY |
GC content | 39.83% |
Information content (bits; total / per base) | 14.163 / 0.885 |
Data sources | ChIP-Seq + HT-SELEX |
Aligned words | 803 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 1 (7) | 0.97 | 0.975 | 0.952 | 0.962 | 0.971 | 0.974 | 6.149 | 6.282 | 407.108 | 423.076 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.885 | 0.863 | 0.827 | 0.809 | 0.764 | 0.753 |
best | 0.993 | 0.989 | 0.971 | 0.961 | 0.919 | 0.903 | |
Methyl HT-SELEX, 1 experiments | median | 0.777 | 0.737 | 0.683 | 0.657 | 0.608 | 0.603 |
best | 0.777 | 0.737 | 0.683 | 0.657 | 0.608 | 0.603 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.993 | 0.989 | 0.971 | 0.961 | 0.919 | 0.903 |
best | 0.993 | 0.989 | 0.971 | 0.961 | 0.919 | 0.903 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | DM-type intertwined zinc finger factors {2.5} (TFClass) |
TF family | DMRT {2.5.1} (TFClass) |
TF subfamily | {2.5.1.0} (TFClass) |
TFClass ID | TFClass: 2.5.1.0.1 |
HGNC | HGNC:2934 |
MGI | MGI:1354733 |
EntrezGene (human) | GeneID:1761 (SSTAR profile) |
EntrezGene (mouse) | GeneID:50796 (SSTAR profile) |
UniProt ID (human) | DMRT1_HUMAN |
UniProt ID (mouse) | DMRT1_MOUSE |
UniProt AC (human) | Q9Y5R6 (TFClass) |
UniProt AC (mouse) | Q9QZ59 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 1 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | DMRT1.H12RSNP.0.PS.D.pcm |
PWM | DMRT1.H12RSNP.0.PS.D.pwm |
PFM | DMRT1.H12RSNP.0.PS.D.pfm |
Alignment | DMRT1.H12RSNP.0.PS.D.words.tsv |
Threshold to P-value map | DMRT1.H12RSNP.0.PS.D.thr |
Motif in other formats | |
JASPAR format | DMRT1.H12RSNP.0.PS.D_jaspar_format.txt |
MEME format | DMRT1.H12RSNP.0.PS.D_meme_format.meme |
Transfac format | DMRT1.H12RSNP.0.PS.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 247.0 | 145.0 | 167.0 | 244.0 |
02 | 89.0 | 207.0 | 78.0 | 429.0 |
03 | 156.0 | 8.0 | 183.0 | 456.0 |
04 | 5.0 | 8.0 | 781.0 | 9.0 |
05 | 170.0 | 385.0 | 4.0 | 244.0 |
06 | 247.0 | 78.0 | 23.0 | 455.0 |
07 | 770.0 | 1.0 | 21.0 | 11.0 |
08 | 5.0 | 761.0 | 15.0 | 22.0 |
09 | 581.0 | 15.0 | 4.0 | 203.0 |
10 | 220.0 | 90.0 | 83.0 | 410.0 |
11 | 74.0 | 5.0 | 16.0 | 708.0 |
12 | 11.0 | 16.0 | 741.0 | 35.0 |
13 | 13.0 | 19.0 | 13.0 | 758.0 |
14 | 324.0 | 95.0 | 112.0 | 272.0 |
15 | 119.0 | 73.0 | 278.0 | 333.0 |
16 | 46.0 | 644.0 | 48.0 | 65.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.308 | 0.181 | 0.208 | 0.304 |
02 | 0.111 | 0.258 | 0.097 | 0.534 |
03 | 0.194 | 0.01 | 0.228 | 0.568 |
04 | 0.006 | 0.01 | 0.973 | 0.011 |
05 | 0.212 | 0.479 | 0.005 | 0.304 |
06 | 0.308 | 0.097 | 0.029 | 0.567 |
07 | 0.959 | 0.001 | 0.026 | 0.014 |
08 | 0.006 | 0.948 | 0.019 | 0.027 |
09 | 0.724 | 0.019 | 0.005 | 0.253 |
10 | 0.274 | 0.112 | 0.103 | 0.511 |
11 | 0.092 | 0.006 | 0.02 | 0.882 |
12 | 0.014 | 0.02 | 0.923 | 0.044 |
13 | 0.016 | 0.024 | 0.016 | 0.944 |
14 | 0.403 | 0.118 | 0.139 | 0.339 |
15 | 0.148 | 0.091 | 0.346 | 0.415 |
16 | 0.057 | 0.802 | 0.06 | 0.081 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.206 | -0.322 | -0.182 | 0.194 |
02 | -0.803 | 0.03 | -0.932 | 0.755 |
03 | -0.25 | -3.041 | -0.092 | 0.816 |
04 | -3.412 | -3.041 | 1.352 | -2.943 |
05 | -0.165 | 0.647 | -3.575 | 0.194 |
06 | 0.206 | -0.932 | -2.105 | 0.814 |
07 | 1.338 | -4.327 | -2.189 | -2.771 |
08 | -3.412 | 1.326 | -2.497 | -2.146 |
09 | 1.057 | -2.497 | -3.575 | 0.011 |
10 | 0.091 | -0.792 | -0.872 | 0.71 |
11 | -0.984 | -3.412 | -2.438 | 1.254 |
12 | -2.771 | -2.438 | 1.3 | -1.708 |
13 | -2.624 | -2.282 | -2.624 | 1.323 |
14 | 0.476 | -0.739 | -0.577 | 0.302 |
15 | -0.517 | -0.997 | 0.323 | 0.503 |
16 | -1.446 | 1.16 | -1.405 | -1.111 |
P-value | Threshold |
---|---|
0.001 | 3.37986 |
0.0005 | 4.47886 |
0.0001 | 6.78586 |