MotifDMRT1.H12RSNP.0.PS.D
Gene (human)DMRT1
(GeneCards)
Gene synonyms (human)DMT1
Gene (mouse)Dmrt1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length16
ConsensusnhKGYWACAhTGTddY
GC content39.83%
Information content (bits; total / per base)14.163 / 0.885
Data sourcesChIP-Seq + HT-SELEX
Aligned words803

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.97 0.975 0.952 0.962 0.971 0.974 6.149 6.282 407.108 423.076

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.885 0.863 0.827 0.809 0.764 0.753
best 0.993 0.989 0.971 0.961 0.919 0.903
Methyl HT-SELEX, 1 experiments median 0.777 0.737 0.683 0.657 0.608 0.603
best 0.777 0.737 0.683 0.657 0.608 0.603
Non-Methyl HT-SELEX, 1 experiments median 0.993 0.989 0.971 0.961 0.919 0.903
best 0.993 0.989 0.971 0.961 0.919 0.903
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classDM-type intertwined zinc finger factors {2.5} (TFClass)
TF familyDMRT {2.5.1} (TFClass)
TF subfamily {2.5.1.0} (TFClass)
TFClass IDTFClass: 2.5.1.0.1
HGNCHGNC:2934
MGIMGI:1354733
EntrezGene (human)GeneID:1761
(SSTAR profile)
EntrezGene (mouse)GeneID:50796
(SSTAR profile)
UniProt ID (human)DMRT1_HUMAN
UniProt ID (mouse)DMRT1_MOUSE
UniProt AC (human)Q9Y5R6
(TFClass)
UniProt AC (mouse)Q9QZ59
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01247.0145.0167.0244.0
0289.0207.078.0429.0
03156.08.0183.0456.0
045.08.0781.09.0
05170.0385.04.0244.0
06247.078.023.0455.0
07770.01.021.011.0
085.0761.015.022.0
09581.015.04.0203.0
10220.090.083.0410.0
1174.05.016.0708.0
1211.016.0741.035.0
1313.019.013.0758.0
14324.095.0112.0272.0
15119.073.0278.0333.0
1646.0644.048.065.0
PFM
ACGT
010.3080.1810.2080.304
020.1110.2580.0970.534
030.1940.010.2280.568
040.0060.010.9730.011
050.2120.4790.0050.304
060.3080.0970.0290.567
070.9590.0010.0260.014
080.0060.9480.0190.027
090.7240.0190.0050.253
100.2740.1120.1030.511
110.0920.0060.020.882
120.0140.020.9230.044
130.0160.0240.0160.944
140.4030.1180.1390.339
150.1480.0910.3460.415
160.0570.8020.060.081
PWM
ACGT
010.206-0.322-0.1820.194
02-0.8030.03-0.9320.755
03-0.25-3.041-0.0920.816
04-3.412-3.0411.352-2.943
05-0.1650.647-3.5750.194
060.206-0.932-2.1050.814
071.338-4.327-2.189-2.771
08-3.4121.326-2.497-2.146
091.057-2.497-3.5750.011
100.091-0.792-0.8720.71
11-0.984-3.412-2.4381.254
12-2.771-2.4381.3-1.708
13-2.624-2.282-2.6241.323
140.476-0.739-0.5770.302
15-0.517-0.9970.3230.503
16-1.4461.16-1.405-1.111
Standard thresholds
P-value Threshold
0.001 3.37986
0.0005 4.47886
0.0001 6.78586