MotifDMRT1.H12INVIVO.1.M.C
Gene (human)DMRT1
(GeneCards)
Gene synonyms (human)DMT1
Gene (mouse)Dmrt1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length13
ConsensusnhhYGYWACAWYn
GC content42.7%
Information content (bits; total / per base)10.479 / 0.806
Data sourcesMethyl-HT-SELEX
Aligned words718

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.902 0.908 0.835 0.842 0.849 0.854 2.95 2.969 223.62 243.149

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.958 0.936 0.926 0.901 0.874 0.853
best 0.99 0.982 0.985 0.975 0.967 0.954
Methyl HT-SELEX, 1 experiments median 0.926 0.89 0.867 0.827 0.781 0.752
best 0.926 0.89 0.867 0.827 0.781 0.752
Non-Methyl HT-SELEX, 1 experiments median 0.99 0.982 0.985 0.975 0.967 0.954
best 0.99 0.982 0.985 0.975 0.967 0.954
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classDM-type intertwined zinc finger factors {2.5} (TFClass)
TF familyDMRT {2.5.1} (TFClass)
TF subfamily {2.5.1.0} (TFClass)
TFClass IDTFClass: 2.5.1.0.1
HGNCHGNC:2934
MGIMGI:1354733
EntrezGene (human)GeneID:1761
(SSTAR profile)
EntrezGene (mouse)GeneID:50796
(SSTAR profile)
UniProt ID (human)DMRT1_HUMAN
UniProt ID (mouse)DMRT1_MOUSE
UniProt AC (human)Q9Y5R6
(TFClass)
UniProt AC (mouse)Q9QZ59
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01150.25268.25117.25182.25
02264.0210.072.0172.0
03223.082.048.0365.0
0422.0475.064.0157.0
054.056.0657.01.0
06164.0379.02.0173.0
07264.03.02.0449.0
08716.02.00.00.0
090.0718.00.00.0
10568.034.0106.010.0
11211.066.03.0438.0
1254.75158.7561.75442.75
13162.5161.5239.5154.5
PFM
ACGT
010.2090.3740.1630.254
020.3680.2920.10.24
030.3110.1140.0670.508
040.0310.6620.0890.219
050.0060.0780.9150.001
060.2280.5280.0030.241
070.3680.0040.0030.625
080.9970.0030.00.0
090.01.00.00.0
100.7910.0470.1480.014
110.2940.0920.0040.61
120.0760.2210.0860.617
130.2260.2250.3340.215
PWM
ACGT
01-0.1760.399-0.4210.015
020.3830.156-0.9-0.042
030.215-0.773-1.2940.705
04-2.0360.967-1.015-0.133
05-3.469-1.1451.291-4.227
06-0.0890.743-3.906-0.037
070.383-3.664-3.9060.911
081.377-3.906-4.702-4.702
09-4.7021.379-4.702-4.702
101.146-1.626-0.52-2.744
110.16-0.985-3.6640.887
12-1.167-0.122-1.050.897
13-0.099-0.1050.286-0.149
Standard thresholds
P-value Threshold
0.001 4.77246
0.0005 5.72546
0.0001 7.46152