MotifDMRT1.H12INVITRO.1.M.C
Gene (human)DMRT1
(GeneCards)
Gene synonyms (human)DMT1
Gene (mouse)Dmrt1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length12
ConsensusnhYGYTACRWYn
GC content42.79%
Information content (bits; total / per base)10.177 / 0.848
Data sourcesMethyl-HT-SELEX
Aligned words1703

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.902 0.908 0.839 0.846 0.841 0.847 2.895 2.916 219.523 242.102

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.96 0.939 0.926 0.903 0.871 0.852
best 0.992 0.985 0.986 0.977 0.969 0.956
Methyl HT-SELEX, 1 experiments median 0.928 0.893 0.867 0.828 0.773 0.748
best 0.928 0.893 0.867 0.828 0.773 0.748
Non-Methyl HT-SELEX, 1 experiments median 0.992 0.985 0.986 0.977 0.969 0.956
best 0.992 0.985 0.986 0.977 0.969 0.956
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classDM-type intertwined zinc finger factors {2.5} (TFClass)
TF familyDMRT {2.5.1} (TFClass)
TF subfamily {2.5.1.0} (TFClass)
TFClass IDTFClass: 2.5.1.0.1
HGNCHGNC:2934
MGIMGI:1354733
EntrezGene (human)GeneID:1761
(SSTAR profile)
EntrezGene (mouse)GeneID:50796
(SSTAR profile)
UniProt ID (human)DMRT1_HUMAN
UniProt ID (mouse)DMRT1_MOUSE
UniProt AC (human)Q9Y5R6
(TFClass)
UniProt AC (mouse)Q9QZ59
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01548.0471.0265.0419.0
02490.25213.25175.25824.25
0369.01109.0118.0407.0
044.0165.01533.01.0
05364.0958.00.0381.0
06591.05.00.01107.0
071700.03.00.00.0
080.01703.00.00.0
091319.0117.0251.016.0
10532.0132.018.01021.0
11137.25372.25182.251011.25
12412.75417.75535.75336.75
PFM
ACGT
010.3220.2770.1560.246
020.2880.1250.1030.484
030.0410.6510.0690.239
040.0020.0970.90.001
050.2140.5630.00.224
060.3470.0030.00.65
070.9980.0020.00.0
080.01.00.00.0
090.7750.0690.1470.009
100.3120.0780.0110.6
110.0810.2190.1070.594
120.2420.2450.3150.198
PWM
ACGT
010.2510.101-0.471-0.016
020.14-0.687-0.8810.659
03-1.7980.955-1.272-0.045
04-4.29-0.9411.278-5.007
05-0.1560.809-5.438-0.111
060.327-4.132-5.4380.953
071.381-4.477-5.438-5.438
08-5.4381.383-5.438-5.438
091.128-1.28-0.525-3.176
100.222-1.161-3.070.872
11-1.123-0.134-0.8430.863
12-0.031-0.0190.229-0.233
Standard thresholds
P-value Threshold
0.001 4.92092
0.0005 5.84027
0.0001 7.469575