MotifDLX6.H12INVIVO.0.SM.D
Gene (human)DLX6
(GeneCards)
Gene synonyms (human)
Gene (mouse)Dlx6
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnnvnTAATTRbnn
GC content38.25%
Information content (bits; total / per base)11.592 / 0.892
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9618

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.964 0.943 0.906 0.886 0.811 0.809
best 0.982 0.968 0.975 0.958 0.956 0.936
Methyl HT-SELEX, 1 experiments median 0.982 0.968 0.975 0.958 0.956 0.936
best 0.982 0.968 0.975 0.958 0.956 0.936
Non-Methyl HT-SELEX, 3 experiments median 0.951 0.924 0.843 0.824 0.685 0.704
best 0.978 0.962 0.968 0.948 0.936 0.913

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.582 0.165 0.483 0.266
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyDLX {3.1.2.5} (TFClass)
TFClass IDTFClass: 3.1.2.5.6
HGNCHGNC:2919
MGIMGI:101927
EntrezGene (human)GeneID:1750
(SSTAR profile)
EntrezGene (mouse)GeneID:13396
(SSTAR profile)
UniProt ID (human)DLX6_HUMAN
UniProt ID (mouse)DLX6_MOUSE
UniProt AC (human)P56179
(TFClass)
UniProt AC (mouse)P70397
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012325.52499.52774.52018.5
022213.753600.752289.751513.75
031791.03067.04113.0647.0
041345.03551.02367.02355.0
052.044.00.09572.0
069618.00.00.00.0
079618.00.00.00.0
080.00.00.09618.0
090.021.045.09552.0
104946.04.04590.078.0
11861.04962.02641.01154.0
121730.02461.03239.02188.0
131879.02904.02652.02183.0
PFM
ACGT
010.2420.260.2880.21
020.230.3740.2380.157
030.1860.3190.4280.067
040.140.3690.2460.245
050.00.0050.00.995
061.00.00.00.0
071.00.00.00.0
080.00.00.01.0
090.00.0020.0050.993
100.5140.00.4770.008
110.090.5160.2750.12
120.180.2560.3370.227
130.1950.3020.2760.227
PWM
ACGT
01-0.0330.0390.143-0.175
02-0.0830.403-0.049-0.462
03-0.2940.2430.536-1.31
04-0.580.39-0.016-0.021
05-6.329-3.951-6.9561.381
061.386-6.956-6.956-6.956
071.386-6.956-6.956-6.956
08-6.956-6.956-6.9561.386
09-6.956-4.638-3.931.379
100.721-5.9470.646-3.4
11-1.0250.7240.094-0.733
12-0.3290.0230.298-0.094
13-0.2460.1890.098-0.097
Standard thresholds
P-value Threshold
0.001 2.38211
0.0005 4.54892
0.0001 7.99518