Motif | DLX6.H12CORE.0.SM.B |
Gene (human) | DLX6 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Dlx6 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | DLX6.H12CORE.0.SM.B |
Gene (human) | DLX6 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Dlx6 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nnvnTAATTRbnn |
GC content | 38.25% |
Information content (bits; total / per base) | 11.592 / 0.892 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9618 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.964 | 0.943 | 0.906 | 0.886 | 0.811 | 0.809 |
best | 0.982 | 0.968 | 0.975 | 0.958 | 0.956 | 0.936 | |
Methyl HT-SELEX, 1 experiments | median | 0.982 | 0.968 | 0.975 | 0.958 | 0.956 | 0.936 |
best | 0.982 | 0.968 | 0.975 | 0.958 | 0.956 | 0.936 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.951 | 0.924 | 0.843 | 0.824 | 0.685 | 0.704 |
best | 0.978 | 0.962 | 0.968 | 0.948 | 0.936 | 0.913 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.582 | 0.165 | 0.483 | 0.266 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | NK-related {3.1.2} (TFClass) |
TF subfamily | DLX {3.1.2.5} (TFClass) |
TFClass ID | TFClass: 3.1.2.5.6 |
HGNC | HGNC:2919 |
MGI | MGI:101927 |
EntrezGene (human) | GeneID:1750 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13396 (SSTAR profile) |
UniProt ID (human) | DLX6_HUMAN |
UniProt ID (mouse) | DLX6_MOUSE |
UniProt AC (human) | P56179 (TFClass) |
UniProt AC (mouse) | P70397 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | DLX6.H12CORE.0.SM.B.pcm |
PWM | DLX6.H12CORE.0.SM.B.pwm |
PFM | DLX6.H12CORE.0.SM.B.pfm |
Alignment | DLX6.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | DLX6.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | DLX6.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | DLX6.H12CORE.0.SM.B_meme_format.meme |
Transfac format | DLX6.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2325.5 | 2499.5 | 2774.5 | 2018.5 |
02 | 2213.75 | 3600.75 | 2289.75 | 1513.75 |
03 | 1791.0 | 3067.0 | 4113.0 | 647.0 |
04 | 1345.0 | 3551.0 | 2367.0 | 2355.0 |
05 | 2.0 | 44.0 | 0.0 | 9572.0 |
06 | 9618.0 | 0.0 | 0.0 | 0.0 |
07 | 9618.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 9618.0 |
09 | 0.0 | 21.0 | 45.0 | 9552.0 |
10 | 4946.0 | 4.0 | 4590.0 | 78.0 |
11 | 861.0 | 4962.0 | 2641.0 | 1154.0 |
12 | 1730.0 | 2461.0 | 3239.0 | 2188.0 |
13 | 1879.0 | 2904.0 | 2652.0 | 2183.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.242 | 0.26 | 0.288 | 0.21 |
02 | 0.23 | 0.374 | 0.238 | 0.157 |
03 | 0.186 | 0.319 | 0.428 | 0.067 |
04 | 0.14 | 0.369 | 0.246 | 0.245 |
05 | 0.0 | 0.005 | 0.0 | 0.995 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.0 | 0.002 | 0.005 | 0.993 |
10 | 0.514 | 0.0 | 0.477 | 0.008 |
11 | 0.09 | 0.516 | 0.275 | 0.12 |
12 | 0.18 | 0.256 | 0.337 | 0.227 |
13 | 0.195 | 0.302 | 0.276 | 0.227 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.033 | 0.039 | 0.143 | -0.175 |
02 | -0.083 | 0.403 | -0.049 | -0.462 |
03 | -0.294 | 0.243 | 0.536 | -1.31 |
04 | -0.58 | 0.39 | -0.016 | -0.021 |
05 | -6.329 | -3.951 | -6.956 | 1.381 |
06 | 1.386 | -6.956 | -6.956 | -6.956 |
07 | 1.386 | -6.956 | -6.956 | -6.956 |
08 | -6.956 | -6.956 | -6.956 | 1.386 |
09 | -6.956 | -4.638 | -3.93 | 1.379 |
10 | 0.721 | -5.947 | 0.646 | -3.4 |
11 | -1.025 | 0.724 | 0.094 | -0.733 |
12 | -0.329 | 0.023 | 0.298 | -0.094 |
13 | -0.246 | 0.189 | 0.098 | -0.097 |
P-value | Threshold |
---|---|
0.001 | 2.38211 |
0.0005 | 4.54892 |
0.0001 | 7.99518 |