MotifDLX4.H12INVIVO.0.SM.D
Gene (human)DLX4
(GeneCards)
Gene synonyms (human)BP1, DLX7, DLX8, DLX9
Gene (mouse)Dlx4
Gene synonyms (mouse)Dlx7
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnvbTAATTRSnnn
GC content36.46%
Information content (bits; total / per base)11.771 / 0.905
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9779

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.983 0.971 0.977 0.961 0.962 0.943
best 0.994 0.991 0.993 0.987 0.99 0.983
Methyl HT-SELEX, 3 experiments median 0.983 0.972 0.975 0.958 0.96 0.939
best 0.994 0.991 0.992 0.987 0.989 0.982
Non-Methyl HT-SELEX, 5 experiments median 0.983 0.97 0.979 0.963 0.965 0.946
best 0.994 0.989 0.993 0.987 0.99 0.983

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.992 0.754 0.951 0.601
batch 2 0.943 0.833 0.852 0.634
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyDLX {3.1.2.5} (TFClass)
TFClass IDTFClass: 3.1.2.5.4
HGNCHGNC:2917
MGIMGI:94904
EntrezGene (human)GeneID:1748
(SSTAR profile)
EntrezGene (mouse)GeneID:13394
(SSTAR profile)
UniProt ID (human)DLX4_HUMAN
UniProt ID (mouse)DLX4_MOUSE
UniProt AC (human)Q92988
(TFClass)
UniProt AC (mouse)P70436
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 3
PCM
ACGT
012694.252713.252167.252204.25
022054.252646.254276.25802.25
031648.03671.01677.02783.0
040.055.01.09723.0
059778.00.01.00.0
069779.00.00.00.0
070.00.01.09778.0
080.024.026.09729.0
095174.01.04596.08.0
10885.05515.03011.0368.0
111976.02714.02588.02501.0
121520.03436.02632.02191.0
132424.52414.52182.52757.5
PFM
ACGT
010.2760.2770.2220.225
020.210.2710.4370.082
030.1690.3750.1710.285
040.00.0060.00.994
051.00.00.00.0
061.00.00.00.0
070.00.00.01.0
080.00.0020.0030.995
090.5290.00.470.001
100.0910.5640.3080.038
110.2020.2780.2650.256
120.1550.3510.2690.224
130.2480.2470.2230.282
PWM
ACGT
010.0970.104-0.12-0.103
02-0.1740.0790.559-1.112
03-0.3940.406-0.3770.129
04-6.971-3.754-6.611.38
051.385-6.971-6.61-6.971
061.386-6.971-6.971-6.971
07-6.971-6.971-6.611.385
08-6.971-4.533-4.461.38
090.749-6.610.631-5.471
10-1.0140.8130.208-1.888
11-0.2130.1040.0570.023
12-0.4750.340.074-0.109
13-0.008-0.012-0.1130.12
Standard thresholds
P-value Threshold
0.001 2.00681
0.0005 3.92863
0.0001 8.083615