MotifDBP.H12INVIVO.0.SM.D
Gene (human)DBP
(GeneCards)
Gene synonyms (human)
Gene (mouse)Dbp
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length14
ConsensusnhRTTACGTAAYvn
GC content36.78%
Information content (bits; total / per base)15.893 / 1.135
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9856

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 10 experiments median 1.0 0.999 1.0 0.999 0.999 0.998
best 1.0 1.0 1.0 1.0 1.0 1.0
Methyl HT-SELEX, 2 experiments median 0.999 0.999 0.999 0.999 0.999 0.998
best 0.999 0.999 0.999 0.999 0.999 0.998
Non-Methyl HT-SELEX, 8 experiments median 1.0 1.0 1.0 1.0 0.999 0.998
best 1.0 1.0 1.0 1.0 1.0 1.0

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.975 0.807 0.958 0.673
batch 2 0.94 0.848 0.924 0.699
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyC/EBP-related {1.1.8} (TFClass)
TF subfamilyPAR {1.1.8.2} (TFClass)
TFClass IDTFClass: 1.1.8.2.1
HGNCHGNC:2697
MGIMGI:94866
EntrezGene (human)GeneID:1628
(SSTAR profile)
EntrezGene (mouse)GeneID:13170
(SSTAR profile)
UniProt ID (human)DBP_HUMAN
UniProt ID (mouse)DBP_MOUSE
UniProt AC (human)Q10586
(TFClass)
UniProt AC (mouse)Q60925
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 8
Methyl-HT-SELEX 2
PCM
ACGT
012421.02616.02609.02210.0
021628.02816.01492.03920.0
031507.01043.07263.043.0
049.01.00.09846.0
055.02.09.09840.0
069703.01.0152.00.0
070.07473.00.02383.0
081517.06.08333.00.0
091.0283.01.09571.0
109686.0160.04.06.0
119836.04.09.07.0
1275.02378.01631.05772.0
131348.04423.02987.01098.0
142911.52076.52980.51887.5
PFM
ACGT
010.2460.2650.2650.224
020.1650.2860.1510.398
030.1530.1060.7370.004
040.0010.00.00.999
050.0010.00.0010.998
060.9840.00.0150.0
070.00.7580.00.242
080.1540.0010.8450.0
090.00.0290.00.971
100.9830.0160.00.001
110.9980.00.0010.001
120.0080.2410.1650.586
130.1370.4490.3030.111
140.2950.2110.3020.192
PWM
ACGT
01-0.0180.060.057-0.109
02-0.4140.133-0.5010.464
03-0.491-0.8581.08-3.997
04-5.386-6.617-6.9781.385
05-5.823-6.352-5.3861.384
061.37-6.617-2.772-6.978
07-6.9781.109-6.978-0.033
08-0.484-5.6941.218-6.978
09-6.617-2.157-6.6171.356
101.368-2.721-5.97-5.694
111.384-5.97-5.386-5.581
12-3.463-0.035-0.4120.851
13-0.6020.5850.192-0.807
140.167-0.1710.19-0.266
Standard thresholds
P-value Threshold
0.001 -0.21089
0.0005 1.67226
0.0001 5.214965