CTCFL.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CTCFL.H12INVITRO.0.P.D
Gene (human)	CTCFL (GeneCards)
Gene synonyms (human)	BORIS
Gene (mouse)	Ctcfl
Gene synonyms (mouse)	Boris
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	vCCdShAGGKGGCRSb
GC content	77.85%
Information content (bits; total / per base)	15.075 / 0.942
Data sources	ChIP-Seq
Aligned words	847

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	17 (117)	0.94	0.969	0.89	0.944	0.921	0.956	4.705	5.201	514.77	696.721
Mouse	6 (34)	0.934	0.981	0.889	0.965	0.869	0.961	3.984	5.708	437.918	708.481

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.129	3.542	0.184	0.058

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	CTCF-like {2.3.3.50} (TFClass)
TFClass ID	TFClass: 2.3.3.50.2
HGNC	HGNC:16234
MGI	MGI:3652571
EntrezGene (human)	GeneID:140690 (SSTAR profile)
EntrezGene (mouse)	GeneID:664799 (SSTAR profile)
UniProt ID (human)	CTCFL_HUMAN
UniProt ID (mouse)	CTCFL_MOUSE
UniProt AC (human)	Q8NI51 (TFClass)
UniProt AC (mouse)	A2APF3 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	17 human, 6 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	CTCFL.H12INVITRO.0.P.D.pcm
PWM	CTCFL.H12INVITRO.0.P.D.pwm
PFM	CTCFL.H12INVITRO.0.P.D.pfm
Alignment	CTCFL.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	CTCFL.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	CTCFL.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	CTCFL.H12INVITRO.0.P.D_meme_format.meme
Transfac format	CTCFL.H12INVITRO.0.P.D_transfac_format.txt
Homer format	CTCFL.H12INVITRO.0.P.D_homer_format_0.001.txt CTCFL.H12INVITRO.0.P.D_homer_format_0.0005.txt CTCFL.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	148.0	184.0	373.0	142.0
02	36.0	687.0	95.0	29.0
03	20.0	797.0	20.0	10.0
04	285.0	104.0	315.0	143.0
05	70.0	449.0	314.0	14.0
06	93.0	483.0	78.0	193.0
07	732.0	30.0	53.0	32.0
08	12.0	9.0	826.0	0.0
09	158.0	15.0	667.0	7.0
10	40.0	48.0	652.0	107.0
11	18.0	20.0	793.0	16.0
12	18.0	30.0	765.0	34.0
13	61.0	765.0	20.0	1.0
14	136.0	50.0	627.0	34.0
15	53.0	589.0	150.0	55.0
16	92.0	425.0	117.0	213.0

PFM

	A	C	G	T
01	0.175	0.217	0.44	0.168
02	0.043	0.811	0.112	0.034
03	0.024	0.941	0.024	0.012
04	0.336	0.123	0.372	0.169
05	0.083	0.53	0.371	0.017
06	0.11	0.57	0.092	0.228
07	0.864	0.035	0.063	0.038
08	0.014	0.011	0.975	0.0
09	0.187	0.018	0.787	0.008
10	0.047	0.057	0.77	0.126
11	0.021	0.024	0.936	0.019
12	0.021	0.035	0.903	0.04
13	0.072	0.903	0.024	0.001
14	0.161	0.059	0.74	0.04
15	0.063	0.695	0.177	0.065
16	0.109	0.502	0.138	0.251

PWM

	A	C	G	T
01	-0.355	-0.139	0.563	-0.396
02	-1.734	1.171	-0.792	-1.94
03	-2.287	1.32	-2.287	-2.905
04	0.295	-0.703	0.395	-0.389
05	-1.091	0.747	0.391	-2.611
06	-0.813	0.82	-0.985	-0.092
07	1.235	-1.907	-1.362	-1.846
08	-2.747	-2.994	1.355	-4.841
09	-0.29	-2.549	1.142	-3.202
10	-1.633	-1.458	1.119	-0.675
11	-2.383	-2.287	1.315	-2.491
12	-2.383	-1.907	1.279	-1.789
13	-1.225	1.279	-2.287	-4.375
14	-0.438	-1.418	1.08	-1.789
15	-1.362	1.018	-0.342	-1.326
16	-0.823	0.693	-0.587	0.006

Standard thresholds

P-value	Threshold
0.001	3.20006
0.0005	4.28851
0.0001	6.58001