MotifCTCFL.H12CORE.0.P.B
Gene (human)CTCFL
(GeneCards)
Gene synonyms (human)BORIS
Gene (mouse)Ctcfl
Gene synonyms (mouse)Boris
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length16
ConsensusvCCdShAGGKGGCRSb
GC content77.85%
Information content (bits; total / per base)15.075 / 0.942
Data sourcesChIP-Seq
Aligned words847

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 17 (117) 0.94 0.969 0.89 0.944 0.921 0.956 4.705 5.201 514.77 696.721
Mouse 6 (34) 0.934 0.981 0.889 0.965 0.869 0.961 3.984 5.708 437.918 708.481

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 3.129 3.542 0.184 0.058
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyCTCF-like {2.3.3.50} (TFClass)
TFClass IDTFClass: 2.3.3.50.2
HGNCHGNC:16234
MGIMGI:3652571
EntrezGene (human)GeneID:140690
(SSTAR profile)
EntrezGene (mouse)GeneID:664799
(SSTAR profile)
UniProt ID (human)CTCFL_HUMAN
UniProt ID (mouse)CTCFL_MOUSE
UniProt AC (human)Q8NI51
(TFClass)
UniProt AC (mouse)A2APF3
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 17 human, 6 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01148.0184.0373.0142.0
0236.0687.095.029.0
0320.0797.020.010.0
04285.0104.0315.0143.0
0570.0449.0314.014.0
0693.0483.078.0193.0
07732.030.053.032.0
0812.09.0826.00.0
09158.015.0667.07.0
1040.048.0652.0107.0
1118.020.0793.016.0
1218.030.0765.034.0
1361.0765.020.01.0
14136.050.0627.034.0
1553.0589.0150.055.0
1692.0425.0117.0213.0
PFM
ACGT
010.1750.2170.440.168
020.0430.8110.1120.034
030.0240.9410.0240.012
040.3360.1230.3720.169
050.0830.530.3710.017
060.110.570.0920.228
070.8640.0350.0630.038
080.0140.0110.9750.0
090.1870.0180.7870.008
100.0470.0570.770.126
110.0210.0240.9360.019
120.0210.0350.9030.04
130.0720.9030.0240.001
140.1610.0590.740.04
150.0630.6950.1770.065
160.1090.5020.1380.251
PWM
ACGT
01-0.355-0.1390.563-0.396
02-1.7341.171-0.792-1.94
03-2.2871.32-2.287-2.905
040.295-0.7030.395-0.389
05-1.0910.7470.391-2.611
06-0.8130.82-0.985-0.092
071.235-1.907-1.362-1.846
08-2.747-2.9941.355-4.841
09-0.29-2.5491.142-3.202
10-1.633-1.4581.119-0.675
11-2.383-2.2871.315-2.491
12-2.383-1.9071.279-1.789
13-1.2251.279-2.287-4.375
14-0.438-1.4181.08-1.789
15-1.3621.018-0.342-1.326
16-0.8230.693-0.5870.006
Standard thresholds
P-value Threshold
0.001 3.20006
0.0005 4.28851
0.0001 6.58001