MotifCTCF.H12RSNP.0.P.B
Gene (human)CTCF
(GeneCards)
Gene synonyms (human)
Gene (mouse)Ctcf
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length21
ConsensusnbdCCASYAGRKGGCRShvbn
GC content67.52%
Information content (bits; total / per base)19.447 / 0.926
Data sourcesChIP-Seq
Aligned words850

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 238 (303) 0.984 0.995 0.968 0.991 0.978 0.993 6.473 7.937 593.143 978.18
Mouse 143 (168) 0.984 0.996 0.968 0.992 0.983 0.995 6.86 8.749 606.677 1085.137

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.843 0.835 0.704 0.704 0.603 0.622
best 0.843 0.835 0.704 0.704 0.603 0.622

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 3.026 304.569 0.169 0.135
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyCTCF-like {2.3.3.50} (TFClass)
TFClass IDTFClass: 2.3.3.50.1
HGNCHGNC:13723
MGIMGI:109447
EntrezGene (human)GeneID:10664
(SSTAR profile)
EntrezGene (mouse)GeneID:13018
(SSTAR profile)
UniProt ID (human)CTCF_HUMAN
UniProt ID (mouse)CTCF_MOUSE
UniProt AC (human)P49711
(TFClass)
UniProt AC (mouse)Q61164
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 238 human, 143 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
0174.0284.074.0418.0
02115.0169.0413.0153.0
03247.051.0445.0107.0
0421.0807.09.013.0
055.0836.02.07.0
06682.026.098.044.0
0716.0587.0243.04.0
0887.0415.017.0331.0
09804.09.021.016.0
106.02.0837.05.0
11229.08.0596.017.0
1219.025.0580.0226.0
136.04.0837.03.0
1411.020.0798.021.0
1545.0776.09.020.0
16197.018.0625.010.0
1749.0598.0168.035.0
18106.0287.062.0395.0
19300.0212.0282.056.0
2095.0206.0225.0324.0
21260.0179.0193.0218.0
PFM
ACGT
010.0870.3340.0870.492
020.1350.1990.4860.18
030.2910.060.5240.126
040.0250.9490.0110.015
050.0060.9840.0020.008
060.8020.0310.1150.052
070.0190.6910.2860.005
080.1020.4880.020.389
090.9460.0110.0250.019
100.0070.0020.9850.006
110.2690.0090.7010.02
120.0220.0290.6820.266
130.0070.0050.9850.004
140.0130.0240.9390.025
150.0530.9130.0110.024
160.2320.0210.7350.012
170.0580.7040.1980.041
180.1250.3380.0730.465
190.3530.2490.3320.066
200.1120.2420.2650.381
210.3060.2110.2270.256
PWM
ACGT
01-1.040.288-1.040.673
02-0.607-0.2270.661-0.325
030.149-1.4020.735-0.678
04-2.2451.329-2.998-2.68
05-3.4671.364-4.062-3.205
061.161-2.046-0.765-1.545
07-2.4941.0110.133-3.629
08-0.8820.665-2.4390.44
091.325-2.998-2.245-2.494
10-3.327-4.0621.365-3.467
110.074-3.0961.026-2.439
12-2.337-2.0830.9990.061
13-3.327-3.6291.365-3.822
14-2.826-2.291.317-2.245
15-1.5231.289-2.998-2.29
16-0.075-2.3871.074-2.908
17-1.4411.03-0.233-1.764
18-0.6880.298-1.2130.616
190.343-0.0020.281-1.312
20-0.795-0.0310.0570.419
210.2-0.17-0.0950.025
Standard thresholds
P-value Threshold
0.001 0.80481
0.0005 2.17301
0.0001 5.07231