Motif | CTCF.H12RSNP.0.P.B |
Gene (human) | CTCF (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Ctcf |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | CTCF.H12RSNP.0.P.B |
Gene (human) | CTCF (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Ctcf |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 21 |
Consensus | nbdCCASYAGRKGGCRShvbn |
GC content | 67.52% |
Information content (bits; total / per base) | 19.447 / 0.926 |
Data sources | ChIP-Seq |
Aligned words | 850 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 238 (303) | 0.984 | 0.995 | 0.968 | 0.991 | 0.978 | 0.993 | 6.473 | 7.937 | 593.143 | 978.18 |
Mouse | 143 (168) | 0.984 | 0.996 | 0.968 | 0.992 | 0.983 | 0.995 | 6.86 | 8.749 | 606.677 | 1085.137 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 1 experiments | median | 0.843 | 0.835 | 0.704 | 0.704 | 0.603 | 0.622 |
best | 0.843 | 0.835 | 0.704 | 0.704 | 0.603 | 0.622 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 3.026 | 304.569 | 0.169 | 0.135 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
TF subfamily | CTCF-like {2.3.3.50} (TFClass) |
TFClass ID | TFClass: 2.3.3.50.1 |
HGNC | HGNC:13723 |
MGI | MGI:109447 |
EntrezGene (human) | GeneID:10664 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13018 (SSTAR profile) |
UniProt ID (human) | CTCF_HUMAN |
UniProt ID (mouse) | CTCF_MOUSE |
UniProt AC (human) | P49711 (TFClass) |
UniProt AC (mouse) | Q61164 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 238 human, 143 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 0 |
PCM | CTCF.H12RSNP.0.P.B.pcm |
PWM | CTCF.H12RSNP.0.P.B.pwm |
PFM | CTCF.H12RSNP.0.P.B.pfm |
Alignment | CTCF.H12RSNP.0.P.B.words.tsv |
Threshold to P-value map | CTCF.H12RSNP.0.P.B.thr |
Motif in other formats | |
JASPAR format | CTCF.H12RSNP.0.P.B_jaspar_format.txt |
MEME format | CTCF.H12RSNP.0.P.B_meme_format.meme |
Transfac format | CTCF.H12RSNP.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 74.0 | 284.0 | 74.0 | 418.0 |
02 | 115.0 | 169.0 | 413.0 | 153.0 |
03 | 247.0 | 51.0 | 445.0 | 107.0 |
04 | 21.0 | 807.0 | 9.0 | 13.0 |
05 | 5.0 | 836.0 | 2.0 | 7.0 |
06 | 682.0 | 26.0 | 98.0 | 44.0 |
07 | 16.0 | 587.0 | 243.0 | 4.0 |
08 | 87.0 | 415.0 | 17.0 | 331.0 |
09 | 804.0 | 9.0 | 21.0 | 16.0 |
10 | 6.0 | 2.0 | 837.0 | 5.0 |
11 | 229.0 | 8.0 | 596.0 | 17.0 |
12 | 19.0 | 25.0 | 580.0 | 226.0 |
13 | 6.0 | 4.0 | 837.0 | 3.0 |
14 | 11.0 | 20.0 | 798.0 | 21.0 |
15 | 45.0 | 776.0 | 9.0 | 20.0 |
16 | 197.0 | 18.0 | 625.0 | 10.0 |
17 | 49.0 | 598.0 | 168.0 | 35.0 |
18 | 106.0 | 287.0 | 62.0 | 395.0 |
19 | 300.0 | 212.0 | 282.0 | 56.0 |
20 | 95.0 | 206.0 | 225.0 | 324.0 |
21 | 260.0 | 179.0 | 193.0 | 218.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.087 | 0.334 | 0.087 | 0.492 |
02 | 0.135 | 0.199 | 0.486 | 0.18 |
03 | 0.291 | 0.06 | 0.524 | 0.126 |
04 | 0.025 | 0.949 | 0.011 | 0.015 |
05 | 0.006 | 0.984 | 0.002 | 0.008 |
06 | 0.802 | 0.031 | 0.115 | 0.052 |
07 | 0.019 | 0.691 | 0.286 | 0.005 |
08 | 0.102 | 0.488 | 0.02 | 0.389 |
09 | 0.946 | 0.011 | 0.025 | 0.019 |
10 | 0.007 | 0.002 | 0.985 | 0.006 |
11 | 0.269 | 0.009 | 0.701 | 0.02 |
12 | 0.022 | 0.029 | 0.682 | 0.266 |
13 | 0.007 | 0.005 | 0.985 | 0.004 |
14 | 0.013 | 0.024 | 0.939 | 0.025 |
15 | 0.053 | 0.913 | 0.011 | 0.024 |
16 | 0.232 | 0.021 | 0.735 | 0.012 |
17 | 0.058 | 0.704 | 0.198 | 0.041 |
18 | 0.125 | 0.338 | 0.073 | 0.465 |
19 | 0.353 | 0.249 | 0.332 | 0.066 |
20 | 0.112 | 0.242 | 0.265 | 0.381 |
21 | 0.306 | 0.211 | 0.227 | 0.256 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.04 | 0.288 | -1.04 | 0.673 |
02 | -0.607 | -0.227 | 0.661 | -0.325 |
03 | 0.149 | -1.402 | 0.735 | -0.678 |
04 | -2.245 | 1.329 | -2.998 | -2.68 |
05 | -3.467 | 1.364 | -4.062 | -3.205 |
06 | 1.161 | -2.046 | -0.765 | -1.545 |
07 | -2.494 | 1.011 | 0.133 | -3.629 |
08 | -0.882 | 0.665 | -2.439 | 0.44 |
09 | 1.325 | -2.998 | -2.245 | -2.494 |
10 | -3.327 | -4.062 | 1.365 | -3.467 |
11 | 0.074 | -3.096 | 1.026 | -2.439 |
12 | -2.337 | -2.083 | 0.999 | 0.061 |
13 | -3.327 | -3.629 | 1.365 | -3.822 |
14 | -2.826 | -2.29 | 1.317 | -2.245 |
15 | -1.523 | 1.289 | -2.998 | -2.29 |
16 | -0.075 | -2.387 | 1.074 | -2.908 |
17 | -1.441 | 1.03 | -0.233 | -1.764 |
18 | -0.688 | 0.298 | -1.213 | 0.616 |
19 | 0.343 | -0.002 | 0.281 | -1.312 |
20 | -0.795 | -0.031 | 0.057 | 0.419 |
21 | 0.2 | -0.17 | -0.095 | 0.025 |
P-value | Threshold |
---|---|
0.001 | 0.80481 |
0.0005 | 2.17301 |
0.0001 | 5.07231 |