MotifCREM.H12RSNP.0.PSM.D
Gene (human)CREM
(GeneCards)
Gene synonyms (human)
Gene (mouse)Crem
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length10
ConsensusnRTGACGYvn
GC content52.96%
Information content (bits; total / per base)11.285 / 1.129
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words8983

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (21) 0.874 0.913 0.813 0.861 0.832 0.88 3.232 3.533 325.046 468.276

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.957 0.933 0.904 0.876 0.804 0.785
best 0.961 0.937 0.904 0.878 0.822 0.795
Methyl HT-SELEX, 1 experiments median 0.954 0.929 0.903 0.874 0.822 0.795
best 0.954 0.929 0.903 0.874 0.822 0.795
Non-Methyl HT-SELEX, 1 experiments median 0.961 0.937 0.904 0.878 0.786 0.776
best 0.961 0.937 0.904 0.878 0.786 0.776
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyCREB-related {1.1.7} (TFClass)
TF subfamilyCREB-like {1.1.7.1} (TFClass)
TFClass IDTFClass: 1.1.7.1.3
HGNCHGNC:2352
MGIMGI:88495
EntrezGene (human)GeneID:1390
(SSTAR profile)
EntrezGene (mouse)GeneID:12916
(SSTAR profile)
UniProt ID (human)CREM_HUMAN
UniProt ID (mouse)CREM_MOUSE
UniProt AC (human)Q03060
(TFClass)
UniProt AC (mouse)P27699
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011743.52742.52647.51849.5
023831.75673.754059.75417.75
032.035.082.08864.0
040.02.08881.0100.0
058983.00.00.00.0
060.08976.06.01.0
0721.035.08925.02.0
08251.01930.0218.06584.0
093555.751900.752365.751160.75
102975.01687.02407.01914.0
PFM
ACGT
010.1940.3050.2950.206
020.4270.0750.4520.047
030.00.0040.0090.987
040.00.00.9890.011
051.00.00.00.0
060.00.9990.0010.0
070.0020.0040.9940.0
080.0280.2150.0240.733
090.3960.2120.2630.129
100.3310.1880.2680.213
PWM
ACGT
01-0.2530.20.164-0.194
020.534-1.2020.592-1.677
03-6.265-4.099-3.2841.372
04-6.895-6.2651.374-3.09
051.386-6.895-6.895-6.895
06-6.8951.385-5.604-6.531
07-4.57-4.0991.379-6.265
08-2.183-0.151-2.3231.075
090.459-0.1670.052-0.659
100.281-0.2860.069-0.16
Standard thresholds
P-value Threshold
0.001 3.5454
0.0005 5.2876
0.0001 7.9889