Motif | CREM.H12RSNP.0.PSM.D |
Gene (human) | CREM (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Crem |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | CREM.H12RSNP.0.PSM.D |
Gene (human) | CREM (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Crem |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 10 |
Consensus | nRTGACGYvn |
GC content | 52.96% |
Information content (bits; total / per base) | 11.285 / 1.129 |
Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
Aligned words | 8983 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 3 (21) | 0.874 | 0.913 | 0.813 | 0.861 | 0.832 | 0.88 | 3.232 | 3.533 | 325.046 | 468.276 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.957 | 0.933 | 0.904 | 0.876 | 0.804 | 0.785 |
best | 0.961 | 0.937 | 0.904 | 0.878 | 0.822 | 0.795 | |
Methyl HT-SELEX, 1 experiments | median | 0.954 | 0.929 | 0.903 | 0.874 | 0.822 | 0.795 |
best | 0.954 | 0.929 | 0.903 | 0.874 | 0.822 | 0.795 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.961 | 0.937 | 0.904 | 0.878 | 0.786 | 0.776 |
best | 0.961 | 0.937 | 0.904 | 0.878 | 0.786 | 0.776 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | CREB-related {1.1.7} (TFClass) |
TF subfamily | CREB-like {1.1.7.1} (TFClass) |
TFClass ID | TFClass: 1.1.7.1.3 |
HGNC | HGNC:2352 |
MGI | MGI:88495 |
EntrezGene (human) | GeneID:1390 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12916 (SSTAR profile) |
UniProt ID (human) | CREM_HUMAN |
UniProt ID (mouse) | CREM_MOUSE |
UniProt AC (human) | Q03060 (TFClass) |
UniProt AC (mouse) | P27699 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 3 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | CREM.H12RSNP.0.PSM.D.pcm |
PWM | CREM.H12RSNP.0.PSM.D.pwm |
PFM | CREM.H12RSNP.0.PSM.D.pfm |
Alignment | CREM.H12RSNP.0.PSM.D.words.tsv |
Threshold to P-value map | CREM.H12RSNP.0.PSM.D.thr |
Motif in other formats | |
JASPAR format | CREM.H12RSNP.0.PSM.D_jaspar_format.txt |
MEME format | CREM.H12RSNP.0.PSM.D_meme_format.meme |
Transfac format | CREM.H12RSNP.0.PSM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1743.5 | 2742.5 | 2647.5 | 1849.5 |
02 | 3831.75 | 673.75 | 4059.75 | 417.75 |
03 | 2.0 | 35.0 | 82.0 | 8864.0 |
04 | 0.0 | 2.0 | 8881.0 | 100.0 |
05 | 8983.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 8976.0 | 6.0 | 1.0 |
07 | 21.0 | 35.0 | 8925.0 | 2.0 |
08 | 251.0 | 1930.0 | 218.0 | 6584.0 |
09 | 3555.75 | 1900.75 | 2365.75 | 1160.75 |
10 | 2975.0 | 1687.0 | 2407.0 | 1914.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.194 | 0.305 | 0.295 | 0.206 |
02 | 0.427 | 0.075 | 0.452 | 0.047 |
03 | 0.0 | 0.004 | 0.009 | 0.987 |
04 | 0.0 | 0.0 | 0.989 | 0.011 |
05 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.999 | 0.001 | 0.0 |
07 | 0.002 | 0.004 | 0.994 | 0.0 |
08 | 0.028 | 0.215 | 0.024 | 0.733 |
09 | 0.396 | 0.212 | 0.263 | 0.129 |
10 | 0.331 | 0.188 | 0.268 | 0.213 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.253 | 0.2 | 0.164 | -0.194 |
02 | 0.534 | -1.202 | 0.592 | -1.677 |
03 | -6.265 | -4.099 | -3.284 | 1.372 |
04 | -6.895 | -6.265 | 1.374 | -3.09 |
05 | 1.386 | -6.895 | -6.895 | -6.895 |
06 | -6.895 | 1.385 | -5.604 | -6.531 |
07 | -4.57 | -4.099 | 1.379 | -6.265 |
08 | -2.183 | -0.151 | -2.323 | 1.075 |
09 | 0.459 | -0.167 | 0.052 | -0.659 |
10 | 0.281 | -0.286 | 0.069 | -0.16 |
P-value | Threshold |
---|---|
0.001 | 3.5454 |
0.0005 | 5.2876 |
0.0001 | 7.9889 |