MotifCREM.H12INVITRO.1.P.C
Gene (human)CREM
(GeneCards)
Gene synonyms (human)
Gene (mouse)Crem
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length18
ConsensusbbbbbKShddTGWhSThh
GC content49.71%
Information content (bits; total / per base)9.33 / 0.518
Data sourcesChIP-Seq
Aligned words1002

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (21) 0.793 0.813 0.69 0.732 0.794 0.816 3.235 4.087 101.745 129.77

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.706 0.648 0.655 0.613 0.606 0.582
best 0.734 0.667 0.687 0.634 0.637 0.602
Methyl HT-SELEX, 1 experiments median 0.734 0.667 0.687 0.634 0.637 0.602
best 0.734 0.667 0.687 0.634 0.637 0.602
Non-Methyl HT-SELEX, 1 experiments median 0.679 0.629 0.622 0.591 0.576 0.563
best 0.679 0.629 0.622 0.591 0.576 0.563
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyCREB-related {1.1.7} (TFClass)
TF subfamilyCREB-like {1.1.7.1} (TFClass)
TFClass IDTFClass: 1.1.7.1.3
HGNCHGNC:2352
MGIMGI:88495
EntrezGene (human)GeneID:1390
(SSTAR profile)
EntrezGene (mouse)GeneID:12916
(SSTAR profile)
UniProt ID (human)CREM_HUMAN
UniProt ID (mouse)CREM_MOUSE
UniProt AC (human)Q03060
(TFClass)
UniProt AC (mouse)P27699
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
0144.0389.0127.0442.0
0295.0171.0400.0336.0
0398.0576.0184.0144.0
04117.0241.0172.0472.0
05132.0179.0531.0160.0
06133.0113.0613.0143.0
07123.0151.0663.065.0
08554.0185.0118.0145.0
09417.093.0282.0210.0
10371.0107.0265.0259.0
1139.027.043.0893.0
1230.012.0911.049.0
13550.048.079.0325.0
14443.0395.041.0123.0
1561.076.0790.075.0
1657.0121.014.0810.0
17133.0539.048.0282.0
18460.0229.033.0280.0
PFM
ACGT
010.0440.3880.1270.441
020.0950.1710.3990.335
030.0980.5750.1840.144
040.1170.2410.1720.471
050.1320.1790.530.16
060.1330.1130.6120.143
070.1230.1510.6620.065
080.5530.1850.1180.145
090.4160.0930.2810.21
100.370.1070.2640.258
110.0390.0270.0430.891
120.030.0120.9090.049
130.5490.0480.0790.324
140.4420.3940.0410.123
150.0610.0760.7880.075
160.0570.1210.0140.808
170.1330.5380.0480.281
180.4590.2290.0330.279
PWM
ACGT
01-1.7080.438-0.6730.565
02-0.958-0.3790.4650.292
03-0.9280.829-0.306-0.549
04-0.754-0.038-0.3730.63
05-0.635-0.3330.748-0.444
06-0.627-0.7880.891-0.555
07-0.704-0.5020.969-1.33
080.79-0.301-0.745-0.542
090.507-0.9790.118-0.175
100.391-0.8410.0560.033
11-1.823-2.172-1.731.266
12-2.073-2.9111.286-1.604
130.783-1.624-1.1390.259
140.5670.453-1.775-0.704
15-1.392-1.1771.144-1.19
16-1.457-0.72-2.7751.169
17-0.6270.763-1.6240.118
180.605-0.089-1.9830.111
Standard thresholds
P-value Threshold
0.001 4.77401
0.0005 5.52656
0.0001 7.09846