Motif | CR3L4.H12RSNP.0.M.D |
Gene (human) | CREB3L4 (GeneCards) |
Gene synonyms (human) | AIBZIP, CREB4, JAL |
Gene (mouse) | Creb3l4 |
Gene synonyms (mouse) | Atce1, Jal, Tisp40 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | CR3L4.H12RSNP.0.M.D |
Gene (human) | CREB3L4 (GeneCards) |
Gene synonyms (human) | AIBZIP, CREB4, JAL |
Gene (mouse) | Creb3l4 |
Gene synonyms (mouse) | Atce1, Jal, Tisp40 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 13 |
Consensus | SRTGACGTGGMvn |
GC content | 62.19% |
Information content (bits; total / per base) | 14.645 / 1.127 |
Data sources | Methyl-HT-SELEX |
Aligned words | 2500 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.99 | 0.985 | 0.973 | 0.963 | 0.919 | 0.906 |
best | 0.998 | 0.996 | 0.99 | 0.987 | 0.948 | 0.94 | |
Methyl HT-SELEX, 1 experiments | median | 0.998 | 0.996 | 0.99 | 0.987 | 0.948 | 0.94 |
best | 0.998 | 0.996 | 0.99 | 0.987 | 0.948 | 0.94 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.982 | 0.973 | 0.956 | 0.939 | 0.891 | 0.871 |
best | 0.982 | 0.973 | 0.956 | 0.939 | 0.891 | 0.871 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | CREB-related {1.1.7} (TFClass) |
TF subfamily | CREB3-like {1.1.7.2} (TFClass) |
TFClass ID | TFClass: 1.1.7.2.5 |
HGNC | HGNC:18854 |
MGI | MGI:1916603 |
EntrezGene (human) | GeneID:148327 (SSTAR profile) |
EntrezGene (mouse) | GeneID:78284 (SSTAR profile) |
UniProt ID (human) | CR3L4_HUMAN |
UniProt ID (mouse) | CR3L4_MOUSE |
UniProt AC (human) | Q8TEY5 (TFClass) |
UniProt AC (mouse) | Q9D2A5 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | CR3L4.H12RSNP.0.M.D.pcm |
PWM | CR3L4.H12RSNP.0.M.D.pwm |
PFM | CR3L4.H12RSNP.0.M.D.pfm |
Alignment | CR3L4.H12RSNP.0.M.D.words.tsv |
Threshold to P-value map | CR3L4.H12RSNP.0.M.D.thr |
Motif in other formats | |
JASPAR format | CR3L4.H12RSNP.0.M.D_jaspar_format.txt |
MEME format | CR3L4.H12RSNP.0.M.D_meme_format.meme |
Transfac format | CR3L4.H12RSNP.0.M.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 265.0 | 376.0 | 1518.0 | 341.0 |
02 | 876.25 | 251.25 | 1245.25 | 127.25 |
03 | 67.0 | 291.0 | 71.0 | 2071.0 |
04 | 28.0 | 342.0 | 2073.0 | 57.0 |
05 | 2462.0 | 0.0 | 38.0 | 0.0 |
06 | 0.0 | 2395.0 | 24.0 | 81.0 |
07 | 5.0 | 0.0 | 2494.0 | 1.0 |
08 | 0.0 | 10.0 | 0.0 | 2490.0 |
09 | 5.0 | 161.0 | 2323.0 | 11.0 |
10 | 201.0 | 14.0 | 2127.0 | 158.0 |
11 | 493.0 | 1826.0 | 35.0 | 146.0 |
12 | 1059.75 | 323.75 | 887.75 | 228.75 |
13 | 553.75 | 576.75 | 807.75 | 561.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.106 | 0.15 | 0.607 | 0.136 |
02 | 0.351 | 0.101 | 0.498 | 0.051 |
03 | 0.027 | 0.116 | 0.028 | 0.828 |
04 | 0.011 | 0.137 | 0.829 | 0.023 |
05 | 0.985 | 0.0 | 0.015 | 0.0 |
06 | 0.0 | 0.958 | 0.01 | 0.032 |
07 | 0.002 | 0.0 | 0.998 | 0.0 |
08 | 0.0 | 0.004 | 0.0 | 0.996 |
09 | 0.002 | 0.064 | 0.929 | 0.004 |
10 | 0.08 | 0.006 | 0.851 | 0.063 |
11 | 0.197 | 0.73 | 0.014 | 0.058 |
12 | 0.424 | 0.13 | 0.355 | 0.092 |
13 | 0.222 | 0.231 | 0.323 | 0.225 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.854 | -0.506 | 0.886 | -0.603 |
02 | 0.337 | -0.907 | 0.688 | -1.579 |
03 | -2.207 | -0.761 | -2.151 | 1.196 |
04 | -3.041 | -0.6 | 1.197 | -2.364 |
05 | 1.369 | -5.77 | -2.753 | -5.77 |
06 | -5.77 | 1.341 | -3.184 | -2.023 |
07 | -4.501 | -5.77 | 1.382 | -5.357 |
08 | -5.77 | -3.96 | -5.77 | 1.38 |
09 | -4.501 | -1.347 | 1.311 | -3.879 |
10 | -1.128 | -3.671 | 1.223 | -1.366 |
11 | -0.236 | 1.07 | -2.831 | -1.444 |
12 | 0.527 | -0.655 | 0.35 | -1.0 |
13 | -0.121 | -0.08 | 0.256 | -0.106 |
P-value | Threshold |
---|---|
0.001 | 2.61261 |
0.0005 | 3.94346 |
0.0001 | 6.63777 |