CR3L4.H12INVIVO.0.M.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CR3L4.H12INVIVO.0.M.D
Gene (human)	CREB3L4 (GeneCards)
Gene synonyms (human)	AIBZIP, CREB4, JAL
Gene (mouse)	Creb3l4
Gene synonyms (mouse)	Atce1, Jal, Tisp40
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	13
Consensus	SRTGACGTGGMvn
GC content	62.19%
Information content (bits; total / per base)	14.645 / 1.127
Data sources	Methyl-HT-SELEX
Aligned words	2500

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.99	0.985	0.973	0.963	0.919	0.906
Overall, 2 experiments	best	0.998	0.996	0.99	0.987	0.948	0.94
Methyl HT-SELEX, 1 experiments	median	0.998	0.996	0.99	0.987	0.948	0.94
Methyl HT-SELEX, 1 experiments	best	0.998	0.996	0.99	0.987	0.948	0.94
Non-Methyl HT-SELEX, 1 experiments	median	0.982	0.973	0.956	0.939	0.891	0.871
Non-Methyl HT-SELEX, 1 experiments	best	0.982	0.973	0.956	0.939	0.891	0.871

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	CREB-related {1.1.7} (TFClass)
TF subfamily	CREB3-like {1.1.7.2} (TFClass)
TFClass ID	TFClass: 1.1.7.2.5
HGNC	HGNC:18854
MGI	MGI:1916603
EntrezGene (human)	GeneID:148327 (SSTAR profile)
EntrezGene (mouse)	GeneID:78284 (SSTAR profile)
UniProt ID (human)	CR3L4_HUMAN
UniProt ID (mouse)	CR3L4_MOUSE
UniProt AC (human)	Q8TEY5 (TFClass)
UniProt AC (mouse)	Q9D2A5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	CR3L4.H12INVIVO.0.M.D.pcm
PWM	CR3L4.H12INVIVO.0.M.D.pwm
PFM	CR3L4.H12INVIVO.0.M.D.pfm
Alignment	CR3L4.H12INVIVO.0.M.D.words.tsv
Threshold to P-value map	CR3L4.H12INVIVO.0.M.D.thr
Motif in other formats
JASPAR format	CR3L4.H12INVIVO.0.M.D_jaspar_format.txt
MEME format	CR3L4.H12INVIVO.0.M.D_meme_format.meme
Transfac format	CR3L4.H12INVIVO.0.M.D_transfac_format.txt
Homer format	CR3L4.H12INVIVO.0.M.D_homer_format_0.001.txt CR3L4.H12INVIVO.0.M.D_homer_format_0.0005.txt CR3L4.H12INVIVO.0.M.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	265.0	376.0	1518.0	341.0
02	876.25	251.25	1245.25	127.25
03	67.0	291.0	71.0	2071.0
04	28.0	342.0	2073.0	57.0
05	2462.0	0.0	38.0	0.0
06	0.0	2395.0	24.0	81.0
07	5.0	0.0	2494.0	1.0
08	0.0	10.0	0.0	2490.0
09	5.0	161.0	2323.0	11.0
10	201.0	14.0	2127.0	158.0
11	493.0	1826.0	35.0	146.0
12	1059.75	323.75	887.75	228.75
13	553.75	576.75	807.75	561.75

PFM

	A	C	G	T
01	0.106	0.15	0.607	0.136
02	0.351	0.101	0.498	0.051
03	0.027	0.116	0.028	0.828
04	0.011	0.137	0.829	0.023
05	0.985	0.0	0.015	0.0
06	0.0	0.958	0.01	0.032
07	0.002	0.0	0.998	0.0
08	0.0	0.004	0.0	0.996
09	0.002	0.064	0.929	0.004
10	0.08	0.006	0.851	0.063
11	0.197	0.73	0.014	0.058
12	0.424	0.13	0.355	0.092
13	0.222	0.231	0.323	0.225

PWM

	A	C	G	T
01	-0.854	-0.506	0.886	-0.603
02	0.337	-0.907	0.688	-1.579
03	-2.207	-0.761	-2.151	1.196
04	-3.041	-0.6	1.197	-2.364
05	1.369	-5.77	-2.753	-5.77
06	-5.77	1.341	-3.184	-2.023
07	-4.501	-5.77	1.382	-5.357
08	-5.77	-3.96	-5.77	1.38
09	-4.501	-1.347	1.311	-3.879
10	-1.128	-3.671	1.223	-1.366
11	-0.236	1.07	-2.831	-1.444
12	0.527	-0.655	0.35	-1.0
13	-0.121	-0.08	0.256	-0.106

Standard thresholds

P-value	Threshold
0.001	2.61261
0.0005	3.94346
0.0001	6.63777