CR3L2.H12INVIVO.0.PS.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CR3L2.H12INVIVO.0.PS.A
Gene (human)	CREB3L2 (GeneCards)
Gene synonyms (human)	BBF2H7
Gene (mouse)	Creb3l2
Gene synonyms (mouse)	Bbf2h7
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	SvnSAMGTGKM
GC content	67.38%
Information content (bits; total / per base)	9.617 / 0.874
Data sources	ChIP-Seq + HT-SELEX
Aligned words	1026

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	1 (4)	0.789	0.817	0.665	0.691	0.722	0.753	2.263	2.396	76.032	122.42

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.613	0.61	0.561	0.561	0.536	0.538
Non-Methyl HT-SELEX, 2 experiments	best	0.649	0.653	0.576	0.582	0.543	0.55

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	CREB-related {1.1.7} (TFClass)
TF subfamily	CREB3-like {1.1.7.2} (TFClass)
TFClass ID	TFClass: 1.1.7.2.3
HGNC	HGNC:23720
MGI	MGI:2442695
EntrezGene (human)	GeneID:64764 (SSTAR profile)
EntrezGene (mouse)	GeneID:208647 (SSTAR profile)
UniProt ID (human)	CR3L2_HUMAN
UniProt ID (mouse)	CR3L2_MOUSE
UniProt AC (human)	Q70SY1 (TFClass)
UniProt AC (mouse)	Q8BH52 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	CR3L2.H12INVIVO.0.PS.A.pcm
PWM	CR3L2.H12INVIVO.0.PS.A.pwm
PFM	CR3L2.H12INVIVO.0.PS.A.pfm
Alignment	CR3L2.H12INVIVO.0.PS.A.words.tsv
Threshold to P-value map	CR3L2.H12INVIVO.0.PS.A.thr
Motif in other formats
JASPAR format	CR3L2.H12INVIVO.0.PS.A_jaspar_format.txt
MEME format	CR3L2.H12INVIVO.0.PS.A_meme_format.meme
Transfac format	CR3L2.H12INVIVO.0.PS.A_transfac_format.txt
Homer format	CR3L2.H12INVIVO.0.PS.A_homer_format_0.001.txt CR3L2.H12INVIVO.0.PS.A_homer_format_0.0005.txt CR3L2.H12INVIVO.0.PS.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	114.0	168.0	624.0	120.0
02	141.0	468.0	314.0	103.0
03	158.0	245.0	338.0	285.0
04	109.0	129.0	693.0	95.0
05	826.0	41.0	142.0	17.0
06	214.0	705.0	56.0	51.0
07	41.0	14.0	960.0	11.0
08	15.0	78.0	5.0	928.0
09	21.0	21.0	970.0	14.0
10	83.0	10.0	802.0	131.0
11	154.0	789.0	33.0	50.0

PFM

	A	C	G	T
01	0.111	0.164	0.608	0.117
02	0.137	0.456	0.306	0.1
03	0.154	0.239	0.329	0.278
04	0.106	0.126	0.675	0.093
05	0.805	0.04	0.138	0.017
06	0.209	0.687	0.055	0.05
07	0.04	0.014	0.936	0.011
08	0.015	0.076	0.005	0.904
09	0.02	0.02	0.945	0.014
10	0.081	0.01	0.782	0.128
11	0.15	0.769	0.032	0.049

PWM

	A	C	G	T
01	-0.803	-0.42	0.885	-0.752
02	-0.593	0.598	0.201	-0.902
03	-0.48	-0.046	0.274	0.105
04	-0.847	-0.681	0.99	-0.982
05	1.165	-1.799	-0.586	-2.624
06	-0.18	1.007	-1.498	-1.589
07	-1.799	-2.798	1.315	-3.01
08	-2.736	-1.175	-3.647	1.281
09	-2.43	-2.43	1.325	-2.798
10	-1.114	-3.091	1.135	-0.666
11	-0.506	1.119	-2.006	-1.608

Standard thresholds

P-value	Threshold
0.001	4.797565
0.0005	5.58943
0.0001	7.245485