CR3L2.H12INVITRO.0.PS.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CR3L2.H12INVITRO.0.PS.A
Gene (human)	CREB3L2 (GeneCards)
Gene synonyms (human)	BBF2H7
Gene (mouse)	Creb3l2
Gene synonyms (mouse)	Bbf2h7
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	nnbWCGTGKbv
GC content	59.11%
Information content (bits; total / per base)	9.784 / 0.889
Data sources	ChIP-Seq + HT-SELEX
Aligned words	2350

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	1 (4)	0.727	0.746	0.605	0.62	0.666	0.688	2.018	2.105	69.466	110.357

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.66	0.649	0.601	0.591	0.566	0.56
Non-Methyl HT-SELEX, 2 experiments	best	0.696	0.693	0.618	0.613	0.575	0.573

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	CREB-related {1.1.7} (TFClass)
TF subfamily	CREB3-like {1.1.7.2} (TFClass)
TFClass ID	TFClass: 1.1.7.2.3
HGNC	HGNC:23720
MGI	MGI:2442695
EntrezGene (human)	GeneID:64764 (SSTAR profile)
EntrezGene (mouse)	GeneID:208647 (SSTAR profile)
UniProt ID (human)	CR3L2_HUMAN
UniProt ID (mouse)	CR3L2_MOUSE
UniProt AC (human)	Q70SY1 (TFClass)
UniProt AC (mouse)	Q8BH52 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	CR3L2.H12INVITRO.0.PS.A.pcm
PWM	CR3L2.H12INVITRO.0.PS.A.pwm
PFM	CR3L2.H12INVITRO.0.PS.A.pfm
Alignment	CR3L2.H12INVITRO.0.PS.A.words.tsv
Threshold to P-value map	CR3L2.H12INVITRO.0.PS.A.thr
Motif in other formats
JASPAR format	CR3L2.H12INVITRO.0.PS.A_jaspar_format.txt
MEME format	CR3L2.H12INVITRO.0.PS.A_meme_format.meme
Transfac format	CR3L2.H12INVITRO.0.PS.A_transfac_format.txt
Homer format	CR3L2.H12INVITRO.0.PS.A_homer_format_0.001.txt CR3L2.H12INVITRO.0.PS.A_homer_format_0.0005.txt CR3L2.H12INVITRO.0.PS.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	560.25	695.25	577.25	517.25
02	521.0	544.0	394.0	891.0
03	163.0	831.0	654.0	702.0
04	1871.0	110.0	112.0	257.0
05	1.0	2238.0	107.0	4.0
06	0.0	0.0	2350.0	0.0
07	0.0	4.0	10.0	2336.0
08	28.0	4.0	2315.0	3.0
09	97.0	115.0	1752.0	386.0
10	379.25	986.25	487.25	497.25
11	938.5	455.5	537.5	418.5

PFM

	A	C	G	T
01	0.238	0.296	0.246	0.22
02	0.222	0.231	0.168	0.379
03	0.069	0.354	0.278	0.299
04	0.796	0.047	0.048	0.109
05	0.0	0.952	0.046	0.002
06	0.0	0.0	1.0	0.0
07	0.0	0.002	0.004	0.994
08	0.012	0.002	0.985	0.001
09	0.041	0.049	0.746	0.164
10	0.161	0.42	0.207	0.212
11	0.399	0.194	0.229	0.178

PWM

	A	C	G	T
01	-0.047	0.168	-0.018	-0.127
02	-0.12	-0.077	-0.398	0.415
03	-1.274	0.346	0.107	0.178
04	1.156	-1.661	-1.643	-0.823
05	-5.301	1.335	-1.688	-4.597
06	-5.716	-5.716	1.384	-5.716
07	-5.716	-4.597	-3.899	1.378
08	-2.98	-4.597	1.369	-4.782
09	-1.785	-1.618	1.09	-0.418
10	-0.436	0.517	-0.186	-0.166
11	0.467	-0.254	-0.089	-0.338

Standard thresholds

P-value	Threshold
0.001	5.054575
0.0005	5.857085
0.0001	7.671055