Motif | CPEB1.H12RSNP.1.S.D |
Gene (human) | CPEB1 (GeneCards) |
Gene synonyms (human) | CPEB |
Gene (mouse) | Cpeb1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif | CPEB1.H12RSNP.1.S.D |
Gene (human) | CPEB1 (GeneCards) |
Gene synonyms (human) | CPEB |
Gene (mouse) | Cpeb1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif length | 18 |
Consensus | nbbTTTTAThhYhYWhhh |
GC content | 22.81% |
Information content (bits; total / per base) | 15.124 / 0.84 |
Data sources | HT-SELEX |
Aligned words | 2187 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 2 experiments | median | 0.786 | 0.746 | 0.638 | 0.642 | 0.555 | 0.578 |
best | 0.854 | 0.803 | 0.684 | 0.683 | 0.573 | 0.602 |
TF superclass | Yet undefined DNA-binding domains {0} (TFClass) |
TF class | Uncharacterized {0.0} (TFClass) |
TF family | Unannotated {0.0.9} (TFClass) |
TF subfamily | {0.0.9.0} (TFClass) |
TFClass ID | TFClass: 0.0.9.0.8 |
HGNC | HGNC:21744 |
MGI | MGI:108442 |
EntrezGene (human) | GeneID:64506 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12912 (SSTAR profile) |
UniProt ID (human) | CPEB1_HUMAN |
UniProt ID (mouse) | CPEB1_MOUSE |
UniProt AC (human) | Q9BZB8 (TFClass) |
UniProt AC (mouse) | P70166 (TFClass) |
GRECO-DB-TF | no |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 0 |
PCM | CPEB1.H12RSNP.1.S.D.pcm |
PWM | CPEB1.H12RSNP.1.S.D.pwm |
PFM | CPEB1.H12RSNP.1.S.D.pfm |
Alignment | CPEB1.H12RSNP.1.S.D.words.tsv |
Threshold to P-value map | CPEB1.H12RSNP.1.S.D.thr |
Motif in other formats | |
JASPAR format | CPEB1.H12RSNP.1.S.D_jaspar_format.txt |
MEME format | CPEB1.H12RSNP.1.S.D_meme_format.meme |
Transfac format | CPEB1.H12RSNP.1.S.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 379.75 | 424.75 | 827.75 | 554.75 |
02 | 270.25 | 457.25 | 826.25 | 633.25 |
03 | 154.0 | 597.0 | 594.0 | 842.0 |
04 | 1.0 | 9.0 | 5.0 | 2172.0 |
05 | 17.0 | 6.0 | 4.0 | 2160.0 |
06 | 7.0 | 2.0 | 1.0 | 2177.0 |
07 | 1.0 | 1.0 | 0.0 | 2185.0 |
08 | 2171.0 | 0.0 | 0.0 | 16.0 |
09 | 8.0 | 87.0 | 21.0 | 2071.0 |
10 | 349.0 | 719.0 | 143.0 | 976.0 |
11 | 635.0 | 416.0 | 221.0 | 915.0 |
12 | 206.0 | 403.0 | 184.0 | 1394.0 |
13 | 377.0 | 369.0 | 180.0 | 1261.0 |
14 | 285.0 | 294.0 | 118.0 | 1490.0 |
15 | 295.0 | 272.0 | 123.0 | 1497.0 |
16 | 455.0 | 264.0 | 185.0 | 1283.0 |
17 | 511.75 | 329.75 | 211.75 | 1133.75 |
18 | 513.5 | 355.5 | 328.5 | 989.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.174 | 0.194 | 0.378 | 0.254 |
02 | 0.124 | 0.209 | 0.378 | 0.29 |
03 | 0.07 | 0.273 | 0.272 | 0.385 |
04 | 0.0 | 0.004 | 0.002 | 0.993 |
05 | 0.008 | 0.003 | 0.002 | 0.988 |
06 | 0.003 | 0.001 | 0.0 | 0.995 |
07 | 0.0 | 0.0 | 0.0 | 0.999 |
08 | 0.993 | 0.0 | 0.0 | 0.007 |
09 | 0.004 | 0.04 | 0.01 | 0.947 |
10 | 0.16 | 0.329 | 0.065 | 0.446 |
11 | 0.29 | 0.19 | 0.101 | 0.418 |
12 | 0.094 | 0.184 | 0.084 | 0.637 |
13 | 0.172 | 0.169 | 0.082 | 0.577 |
14 | 0.13 | 0.134 | 0.054 | 0.681 |
15 | 0.135 | 0.124 | 0.056 | 0.684 |
16 | 0.208 | 0.121 | 0.085 | 0.587 |
17 | 0.234 | 0.151 | 0.097 | 0.518 |
18 | 0.235 | 0.163 | 0.15 | 0.452 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.363 | -0.251 | 0.414 | 0.014 |
02 | -0.701 | -0.178 | 0.412 | 0.146 |
03 | -1.258 | 0.088 | 0.083 | 0.431 |
04 | -5.235 | -3.917 | -4.373 | 1.377 |
05 | -3.367 | -4.238 | -4.529 | 1.371 |
06 | -4.119 | -4.941 | -5.235 | 1.379 |
07 | -5.235 | -5.235 | -5.654 | 1.383 |
08 | 1.376 | -5.654 | -5.654 | -3.421 |
09 | -4.013 | -1.82 | -3.175 | 1.329 |
10 | -0.447 | 0.273 | -1.331 | 0.578 |
11 | 0.149 | -0.272 | -0.901 | 0.514 |
12 | -0.97 | -0.304 | -1.082 | 0.934 |
13 | -0.37 | -0.392 | -1.104 | 0.834 |
14 | -0.648 | -0.617 | -1.521 | 1.0 |
15 | -0.614 | -0.695 | -1.48 | 1.005 |
16 | -0.183 | -0.724 | -1.077 | 0.851 |
17 | -0.066 | -0.503 | -0.943 | 0.727 |
18 | -0.063 | -0.429 | -0.507 | 0.592 |
P-value | Threshold |
---|---|
0.001 | 2.16171 |
0.0005 | 3.53331 |
0.0001 | 6.50061 |