MotifCPEB1.H12RSNP.1.S.D
Gene (human)CPEB1
(GeneCards)
Gene synonyms (human)CPEB
Gene (mouse)Cpeb1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length18
ConsensusnbbTTTTAThhYhYWhhh
GC content22.81%
Information content (bits; total / per base)15.124 / 0.84
Data sourcesHT-SELEX
Aligned words2187

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.786 0.746 0.638 0.642 0.555 0.578
best 0.854 0.803 0.684 0.683 0.573 0.602
TF superclassYet undefined DNA-binding domains {0} (TFClass)
TF classUncharacterized {0.0} (TFClass)
TF familyUnannotated {0.0.9} (TFClass)
TF subfamily {0.0.9.0} (TFClass)
TFClass IDTFClass: 0.0.9.0.8
HGNCHGNC:21744
MGIMGI:108442
EntrezGene (human)GeneID:64506
(SSTAR profile)
EntrezGene (mouse)GeneID:12912
(SSTAR profile)
UniProt ID (human)CPEB1_HUMAN
UniProt ID (mouse)CPEB1_MOUSE
UniProt AC (human)Q9BZB8
(TFClass)
UniProt AC (mouse)P70166
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01379.75424.75827.75554.75
02270.25457.25826.25633.25
03154.0597.0594.0842.0
041.09.05.02172.0
0517.06.04.02160.0
067.02.01.02177.0
071.01.00.02185.0
082171.00.00.016.0
098.087.021.02071.0
10349.0719.0143.0976.0
11635.0416.0221.0915.0
12206.0403.0184.01394.0
13377.0369.0180.01261.0
14285.0294.0118.01490.0
15295.0272.0123.01497.0
16455.0264.0185.01283.0
17511.75329.75211.751133.75
18513.5355.5328.5989.5
PFM
ACGT
010.1740.1940.3780.254
020.1240.2090.3780.29
030.070.2730.2720.385
040.00.0040.0020.993
050.0080.0030.0020.988
060.0030.0010.00.995
070.00.00.00.999
080.9930.00.00.007
090.0040.040.010.947
100.160.3290.0650.446
110.290.190.1010.418
120.0940.1840.0840.637
130.1720.1690.0820.577
140.130.1340.0540.681
150.1350.1240.0560.684
160.2080.1210.0850.587
170.2340.1510.0970.518
180.2350.1630.150.452
PWM
ACGT
01-0.363-0.2510.4140.014
02-0.701-0.1780.4120.146
03-1.2580.0880.0830.431
04-5.235-3.917-4.3731.377
05-3.367-4.238-4.5291.371
06-4.119-4.941-5.2351.379
07-5.235-5.235-5.6541.383
081.376-5.654-5.654-3.421
09-4.013-1.82-3.1751.329
10-0.4470.273-1.3310.578
110.149-0.272-0.9010.514
12-0.97-0.304-1.0820.934
13-0.37-0.392-1.1040.834
14-0.648-0.617-1.5211.0
15-0.614-0.695-1.481.005
16-0.183-0.724-1.0770.851
17-0.066-0.503-0.9430.727
18-0.063-0.429-0.5070.592
Standard thresholds
P-value Threshold
0.001 2.16171
0.0005 3.53331
0.0001 6.50061