CPEB1.H12INVITRO.1.S.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CPEB1.H12INVITRO.1.S.B
Gene (human)	CPEB1 (GeneCards)
Gene synonyms (human)	CPEB
Gene (mouse)	Cpeb1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	18
Consensus	nbbTTTTAThhYhYWhhh
GC content	22.81%
Information content (bits; total / per base)	15.124 / 0.84
Data sources	HT-SELEX
Aligned words	2187

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.786	0.746	0.638	0.642	0.555	0.578
Non-Methyl HT-SELEX, 2 experiments	best	0.854	0.803	0.684	0.683	0.573	0.602

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	Unannotated {0.0.9} (TFClass)
TF subfamily	{0.0.9.0} (TFClass)
TFClass ID	TFClass: 0.0.9.0.8
HGNC	HGNC:21744
MGI	MGI:108442
EntrezGene (human)	GeneID:64506 (SSTAR profile)
EntrezGene (mouse)	GeneID:12912 (SSTAR profile)
UniProt ID (human)	CPEB1_HUMAN
UniProt ID (mouse)	CPEB1_MOUSE
UniProt AC (human)	Q9BZB8 (TFClass)
UniProt AC (mouse)	P70166 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	CPEB1.H12INVITRO.1.S.B.pcm
PWM	CPEB1.H12INVITRO.1.S.B.pwm
PFM	CPEB1.H12INVITRO.1.S.B.pfm
Alignment	CPEB1.H12INVITRO.1.S.B.words.tsv
Threshold to P-value map	CPEB1.H12INVITRO.1.S.B.thr
Motif in other formats
JASPAR format	CPEB1.H12INVITRO.1.S.B_jaspar_format.txt
MEME format	CPEB1.H12INVITRO.1.S.B_meme_format.meme
Transfac format	CPEB1.H12INVITRO.1.S.B_transfac_format.txt
Homer format	CPEB1.H12INVITRO.1.S.B_homer_format_0.001.txt CPEB1.H12INVITRO.1.S.B_homer_format_0.0005.txt CPEB1.H12INVITRO.1.S.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	379.75	424.75	827.75	554.75
02	270.25	457.25	826.25	633.25
03	154.0	597.0	594.0	842.0
04	1.0	9.0	5.0	2172.0
05	17.0	6.0	4.0	2160.0
06	7.0	2.0	1.0	2177.0
07	1.0	1.0	0.0	2185.0
08	2171.0	0.0	0.0	16.0
09	8.0	87.0	21.0	2071.0
10	349.0	719.0	143.0	976.0
11	635.0	416.0	221.0	915.0
12	206.0	403.0	184.0	1394.0
13	377.0	369.0	180.0	1261.0
14	285.0	294.0	118.0	1490.0
15	295.0	272.0	123.0	1497.0
16	455.0	264.0	185.0	1283.0
17	511.75	329.75	211.75	1133.75
18	513.5	355.5	328.5	989.5

PFM

	A	C	G	T
01	0.174	0.194	0.378	0.254
02	0.124	0.209	0.378	0.29
03	0.07	0.273	0.272	0.385
04	0.0	0.004	0.002	0.993
05	0.008	0.003	0.002	0.988
06	0.003	0.001	0.0	0.995
07	0.0	0.0	0.0	0.999
08	0.993	0.0	0.0	0.007
09	0.004	0.04	0.01	0.947
10	0.16	0.329	0.065	0.446
11	0.29	0.19	0.101	0.418
12	0.094	0.184	0.084	0.637
13	0.172	0.169	0.082	0.577
14	0.13	0.134	0.054	0.681
15	0.135	0.124	0.056	0.684
16	0.208	0.121	0.085	0.587
17	0.234	0.151	0.097	0.518
18	0.235	0.163	0.15	0.452

PWM

	A	C	G	T
01	-0.363	-0.251	0.414	0.014
02	-0.701	-0.178	0.412	0.146
03	-1.258	0.088	0.083	0.431
04	-5.235	-3.917	-4.373	1.377
05	-3.367	-4.238	-4.529	1.371
06	-4.119	-4.941	-5.235	1.379
07	-5.235	-5.235	-5.654	1.383
08	1.376	-5.654	-5.654	-3.421
09	-4.013	-1.82	-3.175	1.329
10	-0.447	0.273	-1.331	0.578
11	0.149	-0.272	-0.901	0.514
12	-0.97	-0.304	-1.082	0.934
13	-0.37	-0.392	-1.104	0.834
14	-0.648	-0.617	-1.521	1.0
15	-0.614	-0.695	-1.48	1.005
16	-0.183	-0.724	-1.077	0.851
17	-0.066	-0.503	-0.943	0.727
18	-0.063	-0.429	-0.507	0.592

Standard thresholds

P-value	Threshold
0.001	2.16171
0.0005	3.53331
0.0001	6.50061