MotifCPEB1.H12INVITRO.0.S.B
Gene (human)CPEB1
(GeneCards)
Gene synonyms (human)CPEB
Gene (mouse)Cpeb1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length8
ConsensusnTTTTAYn
GC content16.13%
Information content (bits; total / per base)9.904 / 1.238
Data sourcesHT-SELEX
Aligned words8085

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.861 0.81 0.717 0.706 0.596 0.619
best 0.906 0.852 0.774 0.754 0.622 0.649
TF superclassYet undefined DNA-binding domains {0} (TFClass)
TF classUncharacterized {0.0} (TFClass)
TF familyUnannotated {0.0.9} (TFClass)
TF subfamily {0.0.9.0} (TFClass)
TFClass IDTFClass: 0.0.9.0.8
HGNCHGNC:21744
MGIMGI:108442
EntrezGene (human)GeneID:64506
(SSTAR profile)
EntrezGene (mouse)GeneID:12912
(SSTAR profile)
UniProt ID (human)CPEB1_HUMAN
UniProt ID (mouse)CPEB1_MOUSE
UniProt AC (human)Q9BZB8
(TFClass)
UniProt AC (mouse)P70166
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
011171.02007.01973.02934.0
0242.0313.0245.07485.0
03122.0125.00.07838.0
040.01.00.08084.0
050.03.00.08082.0
068085.00.00.00.0
07718.01277.0835.05255.0
081846.251907.251748.252583.25
PFM
ACGT
010.1450.2480.2440.363
020.0050.0390.030.926
030.0150.0150.00.969
040.00.00.01.0
050.00.00.01.0
061.00.00.00.0
070.0890.1580.1030.65
080.2280.2360.2160.32
PWM
ACGT
01-0.545-0.007-0.0240.372
02-3.823-1.859-2.1021.308
03-2.79-2.766-6.8021.354
04-6.802-6.434-6.8021.385
05-6.802-5.954-6.8021.385
061.385-6.802-6.802-6.802
07-1.033-0.459-0.8820.955
08-0.09-0.058-0.1450.245
Standard thresholds
P-value Threshold
0.001 4.959425
0.0005 6.17067
0.0001 7.7154