MotifCOT2.H12RSNP.1.P.D
Gene (human)NR2F2
(GeneCards)
Gene synonyms (human)ARP1, TFCOUP2
Gene (mouse)Nr2f2
Gene synonyms (mouse)Aporp1, Arp-1, Arp1, Tfcoup2
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length12
ConsensusbvRRGGTCAvvd
GC content56.24%
Information content (bits; total / per base)10.421 / 0.868
Data sourcesChIP-Seq
Aligned words582

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 11 (75) 0.81 0.877 0.672 0.758 0.802 0.882 2.448 3.119 137.602 242.658
Mouse 1 (7) 0.731 0.751 0.631 0.656 0.712 0.735 2.319 2.452 66.041 96.102
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyRXR-related receptors {2.1.3} (TFClass)
TF subfamilyCOUP (NR2F) {2.1.3.5} (TFClass)
TFClass IDTFClass: 2.1.3.5.2
HGNCHGNC:7976
MGIMGI:1352452
EntrezGene (human)GeneID:7026
(SSTAR profile)
EntrezGene (mouse)GeneID:11819
(SSTAR profile)
UniProt ID (human)COT2_HUMAN
UniProt ID (mouse)COT2_MOUSE
UniProt AC (human)P24468
(TFClass)
UniProt AC (mouse)P43135
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 11 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0174.0246.0132.0130.0
02290.099.0123.070.0
03244.054.0272.012.0
04369.04.0208.01.0
0510.02.0563.07.0
068.02.0551.021.0
075.018.032.0527.0
085.0521.023.033.0
09550.02.030.00.0
10204.0113.0219.046.0
11210.082.0236.054.0
1297.083.0313.089.0
PFM
ACGT
010.1270.4230.2270.223
020.4980.170.2110.12
030.4190.0930.4670.021
040.6340.0070.3570.002
050.0170.0030.9670.012
060.0140.0030.9470.036
070.0090.0310.0550.905
080.0090.8950.040.057
090.9450.0030.0520.0
100.3510.1940.3760.079
110.3610.1410.4050.093
120.1670.1430.5380.153
PWM
ACGT
01-0.6660.521-0.096-0.111
020.684-0.38-0.166-0.72
030.513-0.9730.621-2.382
040.924-3.270.354-4.039
05-2.541-3.7121.345-2.84
06-2.73-3.7121.324-1.873
07-3.105-2.016-1.4771.279
08-3.1051.268-1.789-1.447
091.322-3.712-1.538-4.526
100.335-0.250.405-1.128
110.364-0.5650.479-0.973
12-0.4-0.5530.76-0.485
Standard thresholds
P-value Threshold
0.001 4.64886
0.0005 5.51692
0.0001 7.453885