MotifCOT2.H12INVIVO.0.P.B
Gene (human)NR2F2
(GeneCards)
Gene synonyms (human)ARP1, TFCOUP2
Gene (mouse)Nr2f2
Gene synonyms (mouse)Aporp1, Arp-1, Arp1, Tfcoup2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length14
ConsensusddRvbnWRAGGTCA
GC content54.99%
Information content (bits; total / per base)11.601 / 0.829
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 11 (75) 0.812 0.88 0.693 0.796 0.783 0.868 2.634 3.532 121.699 237.886
Mouse 1 (7) 0.701 0.724 0.611 0.638 0.688 0.709 2.562 2.706 54.569 69.77
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyRXR-related receptors {2.1.3} (TFClass)
TF subfamilyCOUP (NR2F) {2.1.3.5} (TFClass)
TFClass IDTFClass: 2.1.3.5.2
HGNCHGNC:7976
MGIMGI:1352452
EntrezGene (human)GeneID:7026
(SSTAR profile)
EntrezGene (mouse)GeneID:11819
(SSTAR profile)
UniProt ID (human)COT2_HUMAN
UniProt ID (mouse)COT2_MOUSE
UniProt AC (human)P24468
(TFClass)
UniProt AC (mouse)P43135
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 11 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01337.0126.0403.0134.0
02371.064.0467.098.0
03159.099.0619.0123.0
04167.0156.0571.0106.0
05107.0280.0219.0394.0
06162.0562.0114.0162.0
07694.2598.2588.25119.25
08459.2538.25465.2537.25
09720.253.25269.257.25
1023.252.25958.2516.25
1113.253.25959.2524.25
126.2556.25120.25817.25
139.25879.2550.2561.25
14953.259.2517.2520.25
PFM
ACGT
010.3370.1260.4030.134
020.3710.0640.4670.098
030.1590.0990.6190.123
040.1670.1560.5710.106
050.1070.280.2190.394
060.1620.5620.1140.162
070.6940.0980.0880.119
080.4590.0380.4650.037
090.720.0030.2690.007
100.0230.0020.9580.016
110.0130.0030.9590.024
120.0060.0560.120.817
130.0090.8790.050.061
140.9530.0090.0170.02
PWM
ACGT
010.297-0.6780.475-0.618
020.393-1.3430.622-0.926
03-0.449-0.9160.903-0.702
04-0.4-0.4670.822-0.849
05-0.840.113-0.1310.452
06-0.430.806-0.777-0.43
071.017-0.923-1.029-0.733
080.605-1.840.618-1.865
091.054-3.9240.074-3.334
10-2.31-4.1481.339-2.639
11-2.822-3.9241.34-2.271
12-3.452-1.468-0.7251.18
13-3.1331.253-1.578-1.386
141.333-3.133-2.585-2.438
Standard thresholds
P-value Threshold
0.001 4.31866
0.0005 5.26681
0.0001 7.21506