| Motif | COT2.H12INVITRO.1.P.D |
| Gene (human) | NR2F2 (GeneCards) |
| Gene synonyms (human) | ARP1, TFCOUP2 |
| Gene (mouse) | Nr2f2 |
| Gene synonyms (mouse) | Aporp1, Arp-1, Arp1, Tfcoup2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | COT2.H12INVITRO.1.P.D |
| Gene (human) | NR2F2 (GeneCards) |
| Gene synonyms (human) | ARP1, TFCOUP2 |
| Gene (mouse) | Nr2f2 |
| Gene synonyms (mouse) | Aporp1, Arp-1, Arp1, Tfcoup2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 12 |
| Consensus | bvRRGGTCAvvd |
| GC content | 56.24% |
| Information content (bits; total / per base) | 10.421 / 0.868 |
| Data sources | ChIP-Seq |
| Aligned words | 582 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 11 (75) | 0.81 | 0.877 | 0.672 | 0.758 | 0.802 | 0.882 | 2.448 | 3.119 | 137.602 | 242.658 |
| Mouse | 1 (7) | 0.731 | 0.751 | 0.631 | 0.656 | 0.712 | 0.735 | 2.319 | 2.452 | 66.041 | 96.102 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | RXR-related receptors {2.1.3} (TFClass) |
| TF subfamily | COUP (NR2F) {2.1.3.5} (TFClass) |
| TFClass ID | TFClass: 2.1.3.5.2 |
| HGNC | HGNC:7976 |
| MGI | MGI:1352452 |
| EntrezGene (human) | GeneID:7026 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:11819 (SSTAR profile) |
| UniProt ID (human) | COT2_HUMAN |
| UniProt ID (mouse) | COT2_MOUSE |
| UniProt AC (human) | P24468 (TFClass) |
| UniProt AC (mouse) | P43135 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 11 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | COT2.H12INVITRO.1.P.D.pcm |
| PWM | COT2.H12INVITRO.1.P.D.pwm |
| PFM | COT2.H12INVITRO.1.P.D.pfm |
| Alignment | COT2.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | COT2.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | COT2.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | COT2.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | COT2.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 74.0 | 246.0 | 132.0 | 130.0 |
| 02 | 290.0 | 99.0 | 123.0 | 70.0 |
| 03 | 244.0 | 54.0 | 272.0 | 12.0 |
| 04 | 369.0 | 4.0 | 208.0 | 1.0 |
| 05 | 10.0 | 2.0 | 563.0 | 7.0 |
| 06 | 8.0 | 2.0 | 551.0 | 21.0 |
| 07 | 5.0 | 18.0 | 32.0 | 527.0 |
| 08 | 5.0 | 521.0 | 23.0 | 33.0 |
| 09 | 550.0 | 2.0 | 30.0 | 0.0 |
| 10 | 204.0 | 113.0 | 219.0 | 46.0 |
| 11 | 210.0 | 82.0 | 236.0 | 54.0 |
| 12 | 97.0 | 83.0 | 313.0 | 89.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.127 | 0.423 | 0.227 | 0.223 |
| 02 | 0.498 | 0.17 | 0.211 | 0.12 |
| 03 | 0.419 | 0.093 | 0.467 | 0.021 |
| 04 | 0.634 | 0.007 | 0.357 | 0.002 |
| 05 | 0.017 | 0.003 | 0.967 | 0.012 |
| 06 | 0.014 | 0.003 | 0.947 | 0.036 |
| 07 | 0.009 | 0.031 | 0.055 | 0.905 |
| 08 | 0.009 | 0.895 | 0.04 | 0.057 |
| 09 | 0.945 | 0.003 | 0.052 | 0.0 |
| 10 | 0.351 | 0.194 | 0.376 | 0.079 |
| 11 | 0.361 | 0.141 | 0.405 | 0.093 |
| 12 | 0.167 | 0.143 | 0.538 | 0.153 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.666 | 0.521 | -0.096 | -0.111 |
| 02 | 0.684 | -0.38 | -0.166 | -0.72 |
| 03 | 0.513 | -0.973 | 0.621 | -2.382 |
| 04 | 0.924 | -3.27 | 0.354 | -4.039 |
| 05 | -2.541 | -3.712 | 1.345 | -2.84 |
| 06 | -2.73 | -3.712 | 1.324 | -1.873 |
| 07 | -3.105 | -2.016 | -1.477 | 1.279 |
| 08 | -3.105 | 1.268 | -1.789 | -1.447 |
| 09 | 1.322 | -3.712 | -1.538 | -4.526 |
| 10 | 0.335 | -0.25 | 0.405 | -1.128 |
| 11 | 0.364 | -0.565 | 0.479 | -0.973 |
| 12 | -0.4 | -0.553 | 0.76 | -0.485 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.64886 |
| 0.0005 | 5.51692 |
| 0.0001 | 7.453885 |