Motif | COE2.H12RSNP.0.P.D |
Gene (human) | EBF2 (GeneCards) |
Gene synonyms (human) | COE2 |
Gene (mouse) | Ebf2 |
Gene synonyms (mouse) | Coe2, Mmot1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | COE2.H12RSNP.0.P.D |
Gene (human) | EBF2 (GeneCards) |
Gene synonyms (human) | COE2 |
Gene (mouse) | Ebf2 |
Gene synonyms (mouse) | Coe2, Mmot1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 14 |
Consensus | ddbTCCChdGRGRv |
GC content | 61.3% |
Information content (bits; total / per base) | 13.129 / 0.938 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 9 (55) | 0.941 | 0.97 | 0.874 | 0.932 | 0.901 | 0.943 | 3.316 | 3.848 | 416.398 | 611.796 |
TF superclass | Immunoglobulin fold {6} (TFClass) |
TF class | Rel homology region (RHR) factors {6.1} (TFClass) |
TF family | EBF-related {6.1.5} (TFClass) |
TF subfamily | {6.1.5.0} (TFClass) |
TFClass ID | TFClass: 6.1.5.0.2 |
HGNC | HGNC:19090 |
MGI | MGI:894332 |
EntrezGene (human) | GeneID:64641 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13592 (SSTAR profile) |
UniProt ID (human) | COE2_HUMAN |
UniProt ID (mouse) | COE2_MOUSE |
UniProt AC (human) | Q9HAK2 (TFClass) |
UniProt AC (mouse) | O08792 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 9 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | COE2.H12RSNP.0.P.D.pcm |
PWM | COE2.H12RSNP.0.P.D.pwm |
PFM | COE2.H12RSNP.0.P.D.pfm |
Alignment | COE2.H12RSNP.0.P.D.words.tsv |
Threshold to P-value map | COE2.H12RSNP.0.P.D.thr |
Motif in other formats | |
JASPAR format | COE2.H12RSNP.0.P.D_jaspar_format.txt |
MEME format | COE2.H12RSNP.0.P.D_meme_format.meme |
Transfac format | COE2.H12RSNP.0.P.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 421.0 | 151.0 | 208.0 | 220.0 |
02 | 400.0 | 81.0 | 285.0 | 234.0 |
03 | 139.0 | 171.0 | 338.0 | 352.0 |
04 | 9.0 | 36.0 | 12.0 | 943.0 |
05 | 3.0 | 994.0 | 1.0 | 2.0 |
06 | 0.0 | 989.0 | 0.0 | 11.0 |
07 | 2.0 | 998.0 | 0.0 | 0.0 |
08 | 280.0 | 366.0 | 16.0 | 338.0 |
09 | 436.0 | 54.0 | 306.0 | 204.0 |
10 | 102.0 | 4.0 | 870.0 | 24.0 |
11 | 375.0 | 1.0 | 600.0 | 24.0 |
12 | 0.0 | 6.0 | 989.0 | 5.0 |
13 | 492.0 | 59.0 | 363.0 | 86.0 |
14 | 233.0 | 402.0 | 282.0 | 83.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.421 | 0.151 | 0.208 | 0.22 |
02 | 0.4 | 0.081 | 0.285 | 0.234 |
03 | 0.139 | 0.171 | 0.338 | 0.352 |
04 | 0.009 | 0.036 | 0.012 | 0.943 |
05 | 0.003 | 0.994 | 0.001 | 0.002 |
06 | 0.0 | 0.989 | 0.0 | 0.011 |
07 | 0.002 | 0.998 | 0.0 | 0.0 |
08 | 0.28 | 0.366 | 0.016 | 0.338 |
09 | 0.436 | 0.054 | 0.306 | 0.204 |
10 | 0.102 | 0.004 | 0.87 | 0.024 |
11 | 0.375 | 0.001 | 0.6 | 0.024 |
12 | 0.0 | 0.006 | 0.989 | 0.005 |
13 | 0.492 | 0.059 | 0.363 | 0.086 |
14 | 0.233 | 0.402 | 0.282 | 0.083 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.518 | -0.5 | -0.183 | -0.127 |
02 | 0.467 | -1.113 | 0.13 | -0.066 |
03 | -0.582 | -0.377 | 0.3 | 0.34 |
04 | -3.156 | -1.898 | -2.909 | 1.323 |
05 | -3.975 | 1.375 | -4.525 | -4.213 |
06 | -4.982 | 1.37 | -4.982 | -2.985 |
07 | -4.213 | 1.379 | -4.982 | -4.982 |
08 | 0.113 | 0.379 | -2.653 | 0.3 |
09 | 0.553 | -1.508 | 0.201 | -0.202 |
10 | -0.887 | -3.783 | 1.242 | -2.281 |
11 | 0.403 | -4.525 | 0.871 | -2.281 |
12 | -4.982 | -3.484 | 1.37 | -3.622 |
13 | 0.674 | -1.422 | 0.371 | -1.054 |
14 | -0.07 | 0.472 | 0.12 | -1.089 |
P-value | Threshold |
---|---|
0.001 | 3.33586 |
0.0005 | 4.54746 |
0.0001 | 7.11551 |