Motif | COE1.H12RSNP.0.P.B |
Gene (human) | EBF1 (GeneCards) |
Gene synonyms (human) | COE1, EBF |
Gene (mouse) | Ebf1 |
Gene synonyms (mouse) | Coe1, Ebf |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | COE1.H12RSNP.0.P.B |
Gene (human) | EBF1 (GeneCards) |
Gene synonyms (human) | COE1, EBF |
Gene (mouse) | Ebf1 |
Gene synonyms (mouse) | Coe1, Ebf |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 14 |
Consensus | dbTCCCYWGGGRvh |
GC content | 64.29% |
Information content (bits; total / per base) | 14.671 / 1.048 |
Data sources | ChIP-Seq |
Aligned words | 985 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 8 (55) | 0.954 | 0.974 | 0.906 | 0.941 | 0.924 | 0.951 | 3.888 | 4.113 | 467.301 | 669.824 |
Mouse | 31 (199) | 0.953 | 0.983 | 0.912 | 0.96 | 0.921 | 0.967 | 4.042 | 4.756 | 386.959 | 885.959 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 15.715 | 13.568 | 0.411 | 0.359 |
TF superclass | Immunoglobulin fold {6} (TFClass) |
TF class | Rel homology region (RHR) factors {6.1} (TFClass) |
TF family | EBF-related {6.1.5} (TFClass) |
TF subfamily | {6.1.5.0} (TFClass) |
TFClass ID | TFClass: 6.1.5.0.1 |
HGNC | HGNC:3126 |
MGI | MGI:95275 |
EntrezGene (human) | GeneID:1879 (SSTAR profile) |
EntrezGene (mouse) | GeneID:13591 (SSTAR profile) |
UniProt ID (human) | COE1_HUMAN |
UniProt ID (mouse) | COE1_MOUSE |
UniProt AC (human) | Q9UH73 (TFClass) |
UniProt AC (mouse) | Q07802 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 8 human, 31 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | COE1.H12RSNP.0.P.B.pcm |
PWM | COE1.H12RSNP.0.P.B.pwm |
PFM | COE1.H12RSNP.0.P.B.pfm |
Alignment | COE1.H12RSNP.0.P.B.words.tsv |
Threshold to P-value map | COE1.H12RSNP.0.P.B.thr |
Motif in other formats | |
JASPAR format | COE1.H12RSNP.0.P.B_jaspar_format.txt |
MEME format | COE1.H12RSNP.0.P.B_meme_format.meme |
Transfac format | COE1.H12RSNP.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 351.0 | 84.0 | 290.0 | 260.0 |
02 | 118.0 | 212.0 | 430.0 | 225.0 |
03 | 14.0 | 113.0 | 31.0 | 827.0 |
04 | 4.0 | 967.0 | 8.0 | 6.0 |
05 | 1.25 | 885.25 | 0.25 | 98.25 |
06 | 8.25 | 961.25 | 1.25 | 14.25 |
07 | 47.25 | 675.25 | 18.25 | 244.25 |
08 | 452.25 | 24.25 | 7.25 | 501.25 |
09 | 3.25 | 3.25 | 976.25 | 2.25 |
10 | 151.25 | 0.25 | 821.25 | 12.25 |
11 | 5.25 | 2.25 | 972.25 | 5.25 |
12 | 726.25 | 10.25 | 216.25 | 32.25 |
13 | 177.25 | 451.25 | 261.25 | 95.25 |
14 | 160.25 | 339.25 | 104.25 | 381.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.356 | 0.085 | 0.294 | 0.264 |
02 | 0.12 | 0.215 | 0.437 | 0.228 |
03 | 0.014 | 0.115 | 0.031 | 0.84 |
04 | 0.004 | 0.982 | 0.008 | 0.006 |
05 | 0.001 | 0.899 | 0.0 | 0.1 |
06 | 0.008 | 0.976 | 0.001 | 0.014 |
07 | 0.048 | 0.686 | 0.019 | 0.248 |
08 | 0.459 | 0.025 | 0.007 | 0.509 |
09 | 0.003 | 0.003 | 0.991 | 0.002 |
10 | 0.154 | 0.0 | 0.834 | 0.012 |
11 | 0.005 | 0.002 | 0.987 | 0.005 |
12 | 0.737 | 0.01 | 0.22 | 0.033 |
13 | 0.18 | 0.458 | 0.265 | 0.097 |
14 | 0.163 | 0.344 | 0.106 | 0.387 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.352 | -1.062 | 0.162 | 0.054 |
02 | -0.728 | -0.149 | 0.554 | -0.09 |
03 | -2.758 | -0.771 | -2.025 | 1.207 |
04 | -3.769 | 1.363 | -3.239 | -3.469 |
05 | -4.424 | 1.274 | -4.834 | -0.908 |
06 | -3.213 | 1.357 | -4.424 | -2.742 |
07 | -1.622 | 1.004 | -2.519 | -0.008 |
08 | 0.605 | -2.256 | -3.319 | 0.707 |
09 | -3.909 | -3.909 | 1.372 | -4.134 |
10 | -0.483 | -4.834 | 1.2 | -2.876 |
11 | -3.571 | -4.134 | 1.368 | -3.571 |
12 | 1.077 | -3.031 | -0.129 | -1.988 |
13 | -0.326 | 0.603 | 0.059 | -0.939 |
14 | -0.426 | 0.318 | -0.85 | 0.435 |
P-value | Threshold |
---|---|
0.001 | 2.73926 |
0.0005 | 4.00491 |
0.0001 | 6.61541 |