MotifCOE1.H12RSNP.0.P.B
Gene (human)EBF1
(GeneCards)
Gene synonyms (human)COE1, EBF
Gene (mouse)Ebf1
Gene synonyms (mouse)Coe1, Ebf
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length14
ConsensusdbTCCCYWGGGRvh
GC content64.29%
Information content (bits; total / per base)14.671 / 1.048
Data sourcesChIP-Seq
Aligned words985

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 8 (55) 0.954 0.974 0.906 0.941 0.924 0.951 3.888 4.113 467.301 669.824
Mouse 31 (199) 0.953 0.983 0.912 0.96 0.921 0.967 4.042 4.756 386.959 885.959

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 15.715 13.568 0.411 0.359
TF superclassImmunoglobulin fold {6} (TFClass)
TF classRel homology region (RHR) factors {6.1} (TFClass)
TF familyEBF-related {6.1.5} (TFClass)
TF subfamily {6.1.5.0} (TFClass)
TFClass IDTFClass: 6.1.5.0.1
HGNCHGNC:3126
MGIMGI:95275
EntrezGene (human)GeneID:1879
(SSTAR profile)
EntrezGene (mouse)GeneID:13591
(SSTAR profile)
UniProt ID (human)COE1_HUMAN
UniProt ID (mouse)COE1_MOUSE
UniProt AC (human)Q9UH73
(TFClass)
UniProt AC (mouse)Q07802
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 8 human, 31 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01351.084.0290.0260.0
02118.0212.0430.0225.0
0314.0113.031.0827.0
044.0967.08.06.0
051.25885.250.2598.25
068.25961.251.2514.25
0747.25675.2518.25244.25
08452.2524.257.25501.25
093.253.25976.252.25
10151.250.25821.2512.25
115.252.25972.255.25
12726.2510.25216.2532.25
13177.25451.25261.2595.25
14160.25339.25104.25381.25
PFM
ACGT
010.3560.0850.2940.264
020.120.2150.4370.228
030.0140.1150.0310.84
040.0040.9820.0080.006
050.0010.8990.00.1
060.0080.9760.0010.014
070.0480.6860.0190.248
080.4590.0250.0070.509
090.0030.0030.9910.002
100.1540.00.8340.012
110.0050.0020.9870.005
120.7370.010.220.033
130.180.4580.2650.097
140.1630.3440.1060.387
PWM
ACGT
010.352-1.0620.1620.054
02-0.728-0.1490.554-0.09
03-2.758-0.771-2.0251.207
04-3.7691.363-3.239-3.469
05-4.4241.274-4.834-0.908
06-3.2131.357-4.424-2.742
07-1.6221.004-2.519-0.008
080.605-2.256-3.3190.707
09-3.909-3.9091.372-4.134
10-0.483-4.8341.2-2.876
11-3.571-4.1341.368-3.571
121.077-3.031-0.129-1.988
13-0.3260.6030.059-0.939
14-0.4260.318-0.850.435
Standard thresholds
P-value Threshold
0.001 2.73926
0.0005 4.00491
0.0001 6.61541