COE1.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	COE1.H12INVIVO.0.P.B
Gene (human)	EBF1 (GeneCards)
Gene synonyms (human)	COE1, EBF
Gene (mouse)	Ebf1
Gene synonyms (mouse)	Coe1, Ebf
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	14
Consensus	dbTCCCYWGGGAvh
GC content	63.13%
Information content (bits; total / per base)	15.276 / 1.091
Data sources	ChIP-Seq
Aligned words	988

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	8 (55)	0.956	0.974	0.907	0.941	0.926	0.952	3.881	4.12	463.229	665.337
Mouse	31 (199)	0.954	0.986	0.913	0.966	0.922	0.971	4.041	4.818	385.081	893.959

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	8.602	9.706	0.403	0.339

TF superclass	Immunoglobulin fold {6} (TFClass)
TF class	Rel homology region (RHR) factors {6.1} (TFClass)
TF family	EBF-related {6.1.5} (TFClass)
TF subfamily	{6.1.5.0} (TFClass)
TFClass ID	TFClass: 6.1.5.0.1
HGNC	HGNC:3126
MGI	MGI:95275
EntrezGene (human)	GeneID:1879 (SSTAR profile)
EntrezGene (mouse)	GeneID:13591 (SSTAR profile)
UniProt ID (human)	COE1_HUMAN
UniProt ID (mouse)	COE1_MOUSE
UniProt AC (human)	Q9UH73 (TFClass)
UniProt AC (mouse)	Q07802 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	8 human, 31 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	COE1.H12INVIVO.0.P.B.pcm
PWM	COE1.H12INVIVO.0.P.B.pwm
PFM	COE1.H12INVIVO.0.P.B.pfm
Alignment	COE1.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	COE1.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	COE1.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	COE1.H12INVIVO.0.P.B_meme_format.meme
Transfac format	COE1.H12INVIVO.0.P.B_transfac_format.txt
Homer format	COE1.H12INVIVO.0.P.B_homer_format_0.001.txt COE1.H12INVIVO.0.P.B_homer_format_0.0005.txt COE1.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	366.0	84.0	292.0	246.0
02	96.0	232.0	358.0	302.0
03	11.0	117.0	15.0	845.0
04	0.0	987.0	1.0	0.0
05	4.0	896.0	0.0	88.0
06	1.0	979.0	1.0	7.0
07	40.0	651.0	19.0	278.0
08	470.0	29.0	5.0	484.0
09	6.0	0.0	980.0	2.0
10	153.0	0.0	834.0	1.0
11	0.0	3.0	984.0	1.0
12	789.0	26.0	167.0	6.0
13	211.0	433.0	237.0	107.0
14	170.0	288.0	114.0	416.0

PFM

	A	C	G	T
01	0.37	0.085	0.296	0.249
02	0.097	0.235	0.362	0.306
03	0.011	0.118	0.015	0.855
04	0.0	0.999	0.001	0.0
05	0.004	0.907	0.0	0.089
06	0.001	0.991	0.001	0.007
07	0.04	0.659	0.019	0.281
08	0.476	0.029	0.005	0.49
09	0.006	0.0	0.992	0.002
10	0.155	0.0	0.844	0.001
11	0.0	0.003	0.996	0.001
12	0.799	0.026	0.169	0.006
13	0.214	0.438	0.24	0.108
14	0.172	0.291	0.115	0.421

PWM

	A	C	G	T
01	0.391	-1.065	0.166	-0.004
02	-0.934	-0.062	0.369	0.2
03	-2.973	-0.74	-2.7	1.225
04	-4.972	1.38	-4.514	-4.972
05	-3.772	1.284	-4.972	-1.02
06	-4.514	1.372	-4.514	-3.35
07	-1.785	0.965	-2.485	0.117
08	0.64	-2.091	-3.611	0.669
09	-3.472	-4.972	1.373	-4.202
10	-0.475	-4.972	1.212	-4.514
11	-4.972	-3.964	1.377	-4.514
12	1.157	-2.194	-0.388	-3.472
13	-0.156	0.558	-0.041	-0.828
14	-0.37	0.153	-0.765	0.518

Standard thresholds

P-value	Threshold
0.001	2.05276
0.0005	3.46091
0.0001	6.33691