Motif | CENPB.H12RSNP.0.S.D |
Gene (human) | CENPB (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Cenpb |
Gene synonyms (mouse) | Cenp-b |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | CENPB.H12RSNP.0.S.D |
Gene (human) | CENPB (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Cenpb |
Gene synonyms (mouse) | Cenp-b |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 18 |
Consensus | ndWCCCGCdTnnhRCGWW |
GC content | 53.61% |
Information content (bits; total / per base) | 16.889 / 0.938 |
Data sources | HT-SELEX |
Aligned words | 7955 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 2 experiments | median | 0.997 | 0.996 | 0.893 | 0.901 | 0.709 | 0.749 |
best | 1.0 | 1.0 | 0.943 | 0.947 | 0.747 | 0.785 |
TF superclass | Yet undefined DNA-binding domains {0} (TFClass) |
TF class | Uncharacterized {0.0} (TFClass) |
TF family | Unannotated {0.0.9} (TFClass) |
TF subfamily | {0.0.9.0} (TFClass) |
TFClass ID | TFClass: 0.0.9.0.9 |
HGNC | HGNC:1852 |
MGI | MGI:88376 |
EntrezGene (human) | GeneID:1059 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12616 (SSTAR profile) |
UniProt ID (human) | CENPB_HUMAN |
UniProt ID (mouse) | CENPB_MOUSE |
UniProt AC (human) | P07199 (TFClass) |
UniProt AC (mouse) | P27790 (TFClass) |
GRECO-DB-TF | no |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 0 |
PCM | CENPB.H12RSNP.0.S.D.pcm |
PWM | CENPB.H12RSNP.0.S.D.pwm |
PFM | CENPB.H12RSNP.0.S.D.pfm |
Alignment | CENPB.H12RSNP.0.S.D.words.tsv |
Threshold to P-value map | CENPB.H12RSNP.0.S.D.thr |
Motif in other formats | |
JASPAR format | CENPB.H12RSNP.0.S.D_jaspar_format.txt |
MEME format | CENPB.H12RSNP.0.S.D_meme_format.meme |
Transfac format | CENPB.H12RSNP.0.S.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2336.5 | 1592.5 | 1460.5 | 2565.5 |
02 | 2834.5 | 975.5 | 1028.5 | 3116.5 |
03 | 3325.0 | 750.0 | 360.0 | 3520.0 |
04 | 207.0 | 7415.0 | 1.0 | 332.0 |
05 | 68.0 | 7743.0 | 3.0 | 141.0 |
06 | 3.0 | 7942.0 | 2.0 | 8.0 |
07 | 9.0 | 99.0 | 7815.0 | 32.0 |
08 | 5.0 | 6549.0 | 637.0 | 764.0 |
09 | 3594.0 | 361.0 | 1419.0 | 2581.0 |
10 | 149.0 | 228.0 | 4.0 | 7574.0 |
11 | 2353.0 | 2731.0 | 1499.0 | 1372.0 |
12 | 1682.0 | 2723.0 | 2197.0 | 1353.0 |
13 | 3154.0 | 831.0 | 699.0 | 3271.0 |
14 | 5069.0 | 366.0 | 2100.0 | 420.0 |
15 | 260.0 | 7600.0 | 23.0 | 72.0 |
16 | 501.0 | 62.0 | 7378.0 | 14.0 |
17 | 5283.25 | 680.25 | 492.25 | 1499.25 |
18 | 6391.0 | 548.0 | 450.0 | 566.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.294 | 0.2 | 0.184 | 0.323 |
02 | 0.356 | 0.123 | 0.129 | 0.392 |
03 | 0.418 | 0.094 | 0.045 | 0.442 |
04 | 0.026 | 0.932 | 0.0 | 0.042 |
05 | 0.009 | 0.973 | 0.0 | 0.018 |
06 | 0.0 | 0.998 | 0.0 | 0.001 |
07 | 0.001 | 0.012 | 0.982 | 0.004 |
08 | 0.001 | 0.823 | 0.08 | 0.096 |
09 | 0.452 | 0.045 | 0.178 | 0.324 |
10 | 0.019 | 0.029 | 0.001 | 0.952 |
11 | 0.296 | 0.343 | 0.188 | 0.172 |
12 | 0.211 | 0.342 | 0.276 | 0.17 |
13 | 0.396 | 0.104 | 0.088 | 0.411 |
14 | 0.637 | 0.046 | 0.264 | 0.053 |
15 | 0.033 | 0.955 | 0.003 | 0.009 |
16 | 0.063 | 0.008 | 0.927 | 0.002 |
17 | 0.664 | 0.086 | 0.062 | 0.188 |
18 | 0.803 | 0.069 | 0.057 | 0.071 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.161 | -0.222 | -0.308 | 0.254 |
02 | 0.354 | -0.711 | -0.658 | 0.449 |
03 | 0.514 | -0.973 | -1.704 | 0.57 |
04 | -2.253 | 1.315 | -6.419 | -1.785 |
05 | -3.344 | 1.358 | -5.939 | -2.632 |
06 | -5.939 | 1.384 | -6.151 | -5.27 |
07 | -5.176 | -2.979 | 1.368 | -4.063 |
08 | -5.616 | 1.191 | -1.136 | -0.955 |
09 | 0.591 | -1.701 | -0.337 | 0.26 |
10 | -2.577 | -2.157 | -5.765 | 1.336 |
11 | 0.168 | 0.317 | -0.282 | -0.371 |
12 | -0.167 | 0.314 | 0.099 | -0.385 |
13 | 0.461 | -0.871 | -1.044 | 0.497 |
14 | 0.935 | -1.688 | 0.054 | -1.551 |
15 | -2.027 | 1.34 | -4.368 | -3.289 |
16 | -1.375 | -3.434 | 1.31 | -4.809 |
17 | 0.976 | -1.071 | -1.393 | -0.282 |
18 | 1.167 | -1.286 | -1.482 | -1.254 |
P-value | Threshold |
---|---|
0.001 | 1.41126 |
0.0005 | 2.83311 |
0.0001 | 5.77391 |