MotifCENPB.H12RSNP.0.S.D
Gene (human)CENPB
(GeneCards)
Gene synonyms (human)
Gene (mouse)Cenpb
Gene synonyms (mouse)Cenp-b
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length18
ConsensusndWCCCGCdTnnhRCGWW
GC content53.61%
Information content (bits; total / per base)16.889 / 0.938
Data sourcesHT-SELEX
Aligned words7955

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.997 0.996 0.893 0.901 0.709 0.749
best 1.0 1.0 0.943 0.947 0.747 0.785
TF superclassYet undefined DNA-binding domains {0} (TFClass)
TF classUncharacterized {0.0} (TFClass)
TF familyUnannotated {0.0.9} (TFClass)
TF subfamily {0.0.9.0} (TFClass)
TFClass IDTFClass: 0.0.9.0.9
HGNCHGNC:1852
MGIMGI:88376
EntrezGene (human)GeneID:1059
(SSTAR profile)
EntrezGene (mouse)GeneID:12616
(SSTAR profile)
UniProt ID (human)CENPB_HUMAN
UniProt ID (mouse)CENPB_MOUSE
UniProt AC (human)P07199
(TFClass)
UniProt AC (mouse)P27790
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
012336.51592.51460.52565.5
022834.5975.51028.53116.5
033325.0750.0360.03520.0
04207.07415.01.0332.0
0568.07743.03.0141.0
063.07942.02.08.0
079.099.07815.032.0
085.06549.0637.0764.0
093594.0361.01419.02581.0
10149.0228.04.07574.0
112353.02731.01499.01372.0
121682.02723.02197.01353.0
133154.0831.0699.03271.0
145069.0366.02100.0420.0
15260.07600.023.072.0
16501.062.07378.014.0
175283.25680.25492.251499.25
186391.0548.0450.0566.0
PFM
ACGT
010.2940.20.1840.323
020.3560.1230.1290.392
030.4180.0940.0450.442
040.0260.9320.00.042
050.0090.9730.00.018
060.00.9980.00.001
070.0010.0120.9820.004
080.0010.8230.080.096
090.4520.0450.1780.324
100.0190.0290.0010.952
110.2960.3430.1880.172
120.2110.3420.2760.17
130.3960.1040.0880.411
140.6370.0460.2640.053
150.0330.9550.0030.009
160.0630.0080.9270.002
170.6640.0860.0620.188
180.8030.0690.0570.071
PWM
ACGT
010.161-0.222-0.3080.254
020.354-0.711-0.6580.449
030.514-0.973-1.7040.57
04-2.2531.315-6.419-1.785
05-3.3441.358-5.939-2.632
06-5.9391.384-6.151-5.27
07-5.176-2.9791.368-4.063
08-5.6161.191-1.136-0.955
090.591-1.701-0.3370.26
10-2.577-2.157-5.7651.336
110.1680.317-0.282-0.371
12-0.1670.3140.099-0.385
130.461-0.871-1.0440.497
140.935-1.6880.054-1.551
15-2.0271.34-4.368-3.289
16-1.375-3.4341.31-4.809
170.976-1.071-1.393-0.282
181.167-1.286-1.482-1.254
Standard thresholds
P-value Threshold
0.001 1.41126
0.0005 2.83311
0.0001 5.77391