CENPB.H12INVIVO.0.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CENPB.H12INVIVO.0.S.D
Gene (human)	CENPB (GeneCards)
Gene synonyms (human)
Gene (mouse)	Cenpb
Gene synonyms (mouse)	Cenp-b
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	ndWCCCGCdTnnhRCGWW
GC content	53.61%
Information content (bits; total / per base)	16.889 / 0.938
Data sources	HT-SELEX
Aligned words	7955

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.997	0.996	0.893	0.901	0.709	0.749
Non-Methyl HT-SELEX, 2 experiments	best	1.0	1.0	0.943	0.947	0.747	0.785

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	Unannotated {0.0.9} (TFClass)
TF subfamily	{0.0.9.0} (TFClass)
TFClass ID	TFClass: 0.0.9.0.9
HGNC	HGNC:1852
MGI	MGI:88376
EntrezGene (human)	GeneID:1059 (SSTAR profile)
EntrezGene (mouse)	GeneID:12616 (SSTAR profile)
UniProt ID (human)	CENPB_HUMAN
UniProt ID (mouse)	CENPB_MOUSE
UniProt AC (human)	P07199 (TFClass)
UniProt AC (mouse)	P27790 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	CENPB.H12INVIVO.0.S.D.pcm
PWM	CENPB.H12INVIVO.0.S.D.pwm
PFM	CENPB.H12INVIVO.0.S.D.pfm
Alignment	CENPB.H12INVIVO.0.S.D.words.tsv
Threshold to P-value map	CENPB.H12INVIVO.0.S.D.thr
Motif in other formats
JASPAR format	CENPB.H12INVIVO.0.S.D_jaspar_format.txt
MEME format	CENPB.H12INVIVO.0.S.D_meme_format.meme
Transfac format	CENPB.H12INVIVO.0.S.D_transfac_format.txt
Homer format	CENPB.H12INVIVO.0.S.D_homer_format_0.001.txt CENPB.H12INVIVO.0.S.D_homer_format_0.0005.txt CENPB.H12INVIVO.0.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2336.5	1592.5	1460.5	2565.5
02	2834.5	975.5	1028.5	3116.5
03	3325.0	750.0	360.0	3520.0
04	207.0	7415.0	1.0	332.0
05	68.0	7743.0	3.0	141.0
06	3.0	7942.0	2.0	8.0
07	9.0	99.0	7815.0	32.0
08	5.0	6549.0	637.0	764.0
09	3594.0	361.0	1419.0	2581.0
10	149.0	228.0	4.0	7574.0
11	2353.0	2731.0	1499.0	1372.0
12	1682.0	2723.0	2197.0	1353.0
13	3154.0	831.0	699.0	3271.0
14	5069.0	366.0	2100.0	420.0
15	260.0	7600.0	23.0	72.0
16	501.0	62.0	7378.0	14.0
17	5283.25	680.25	492.25	1499.25
18	6391.0	548.0	450.0	566.0

PFM

	A	C	G	T
01	0.294	0.2	0.184	0.323
02	0.356	0.123	0.129	0.392
03	0.418	0.094	0.045	0.442
04	0.026	0.932	0.0	0.042
05	0.009	0.973	0.0	0.018
06	0.0	0.998	0.0	0.001
07	0.001	0.012	0.982	0.004
08	0.001	0.823	0.08	0.096
09	0.452	0.045	0.178	0.324
10	0.019	0.029	0.001	0.952
11	0.296	0.343	0.188	0.172
12	0.211	0.342	0.276	0.17
13	0.396	0.104	0.088	0.411
14	0.637	0.046	0.264	0.053
15	0.033	0.955	0.003	0.009
16	0.063	0.008	0.927	0.002
17	0.664	0.086	0.062	0.188
18	0.803	0.069	0.057	0.071

PWM

	A	C	G	T
01	0.161	-0.222	-0.308	0.254
02	0.354	-0.711	-0.658	0.449
03	0.514	-0.973	-1.704	0.57
04	-2.253	1.315	-6.419	-1.785
05	-3.344	1.358	-5.939	-2.632
06	-5.939	1.384	-6.151	-5.27
07	-5.176	-2.979	1.368	-4.063
08	-5.616	1.191	-1.136	-0.955
09	0.591	-1.701	-0.337	0.26
10	-2.577	-2.157	-5.765	1.336
11	0.168	0.317	-0.282	-0.371
12	-0.167	0.314	0.099	-0.385
13	0.461	-0.871	-1.044	0.497
14	0.935	-1.688	0.054	-1.551
15	-2.027	1.34	-4.368	-3.289
16	-1.375	-3.434	1.31	-4.809
17	0.976	-1.071	-1.393	-0.282
18	1.167	-1.286	-1.482	-1.254

Standard thresholds

P-value	Threshold
0.001	1.41126
0.0005	2.83311
0.0001	5.77391