MotifCEBPG.H12INVIVO.0.P.B
Gene (human)CEBPG
(GeneCards)
Gene synonyms (human)
Gene (mouse)Cebpg
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusbRTTGCRYAAYh
GC content40.09%
Information content (bits; total / per base)13.912 / 1.159
Data sourcesChIP-Seq
Aligned words991

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (21) 0.977 0.989 0.942 0.972 0.971 0.98 4.659 5.143 799.699 1018.699
Mouse 1 (7) 0.954 0.955 0.921 0.925 0.913 0.915 3.599 3.629 605.187 697.0

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.978 0.959 0.964 0.942 0.854 0.855
best 0.998 0.997 0.995 0.991 0.988 0.982
Methyl HT-SELEX, 2 experiments median 0.988 0.978 0.981 0.969 0.945 0.933
best 0.996 0.993 0.995 0.991 0.988 0.982
Non-Methyl HT-SELEX, 6 experiments median 0.95 0.939 0.841 0.834 0.716 0.736
best 0.998 0.997 0.99 0.983 0.981 0.971

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 3.213 4.229 0.295 0.163
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyC/EBP-related {1.1.8} (TFClass)
TF subfamilyCEBP {1.1.8.1} (TFClass)
TFClass IDTFClass: 1.1.8.1.3
HGNCHGNC:1837
MGIMGI:104982
EntrezGene (human)GeneID:1054
(SSTAR profile)
EntrezGene (mouse)GeneID:12611
(SSTAR profile)
UniProt ID (human)CEBPG_HUMAN
UniProt ID (mouse)CEBPG_MOUSE
UniProt AC (human)P53567
(TFClass)
UniProt AC (mouse)P53568
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 1 mouse
HT-SELEX 6
Methyl-HT-SELEX 2
PCM
ACGT
0195.0149.0323.0424.0
02680.065.0238.08.0
030.00.00.0991.0
040.01.00.0990.0
0520.00.0933.038.0
060.0990.00.01.0
07500.023.0421.047.0
0852.0383.01.0555.0
09552.0439.00.00.0
10991.00.00.00.0
114.0329.085.0573.0
12320.0326.062.0283.0
PFM
ACGT
010.0960.150.3260.428
020.6860.0660.240.008
030.00.00.01.0
040.00.0010.00.999
050.020.00.9410.038
060.00.9990.00.001
070.5050.0230.4250.047
080.0520.3860.0010.56
090.5570.4430.00.0
101.00.00.00.0
110.0040.3320.0860.578
120.3230.3290.0630.286
PWM
ACGT
01-0.947-0.5040.2640.534
021.005-1.319-0.04-3.245
03-4.974-4.974-4.9741.381
04-4.974-4.517-4.9741.38
05-2.441-4.9741.321-1.837
06-4.9741.38-4.974-4.517
070.699-2.3120.527-1.633
08-1.5350.433-4.5170.803
090.7970.569-4.974-4.974
101.381-4.974-4.974-4.974
11-3.7750.282-1.0570.835
120.2540.273-1.3650.132
Standard thresholds
P-value Threshold
0.001 2.50341
0.0005 3.8741
0.0001 6.916965