MotifCEBPG.H12INVITRO.2.P.B
Gene (human)CEBPG
(GeneCards)
Gene synonyms (human)
Gene (mouse)Cebpg
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
B
Motif length12
ConsensusbRTTGCATCAYh
GC content37.81%
Information content (bits; total / per base)15.914 / 1.326
Data sourcesChIP-Seq
Aligned words739

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (21) 0.931 0.973 0.856 0.948 0.909 0.964 3.919 5.21 524.585 754.658
Mouse 1 (7) 0.976 0.978 0.957 0.959 0.952 0.956 4.632 4.64 664.131 758.854

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.966 0.942 0.948 0.92 0.845 0.837
best 0.987 0.977 0.983 0.971 0.974 0.959
Methyl HT-SELEX, 2 experiments median 0.978 0.962 0.967 0.948 0.933 0.913
best 0.987 0.977 0.983 0.971 0.974 0.959
Non-Methyl HT-SELEX, 6 experiments median 0.932 0.904 0.829 0.813 0.712 0.722
best 0.983 0.97 0.975 0.959 0.958 0.937

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 2.03 1.924 0.195 0.104
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyC/EBP-related {1.1.8} (TFClass)
TF subfamilyCEBP {1.1.8.1} (TFClass)
TFClass IDTFClass: 1.1.8.1.3
HGNCHGNC:1837
MGIMGI:104982
EntrezGene (human)GeneID:1054
(SSTAR profile)
EntrezGene (mouse)GeneID:12611
(SSTAR profile)
UniProt ID (human)CEBPG_HUMAN
UniProt ID (mouse)CEBPG_MOUSE
UniProt AC (human)P53567
(TFClass)
UniProt AC (mouse)P53568
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 1 mouse
HT-SELEX 6
Methyl-HT-SELEX 2
PCM
ACGT
0184.087.0280.0288.0
02535.039.0163.02.0
030.00.00.0739.0
040.00.01.0738.0
0524.00.0636.079.0
060.0739.00.00.0
07672.04.056.07.0
0813.047.02.0677.0
0966.0672.01.00.0
10736.00.02.01.0
113.0158.074.0504.0
12146.0321.071.0201.0
PFM
ACGT
010.1140.1180.3790.39
020.7240.0530.2210.003
030.00.00.01.0
040.00.00.0010.999
050.0320.00.8610.107
060.01.00.00.0
070.9090.0050.0760.009
080.0180.0640.0030.916
090.0890.9090.0010.0
100.9960.00.0030.001
110.0040.2140.10.682
120.1980.4340.0960.272
PWM
ACGT
01-0.778-0.7430.4130.441
021.057-1.523-0.124-3.933
03-4.726-4.726-4.7261.38
04-4.726-4.726-4.2531.378
05-1.983-4.7261.23-0.838
06-4.7261.38-4.726-4.726
071.285-3.496-1.173-3.07
08-2.543-1.343-3.9331.292
09-1.0141.285-4.253-4.726
101.376-4.726-3.933-4.253
11-3.691-0.155-0.9020.998
12-0.2330.549-0.9420.084
Standard thresholds
P-value Threshold
0.001 1.685065
0.0005 3.140565
0.0001 6.111955