CEBPG.H12INVITRO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CEBPG.H12INVITRO.0.P.B
Gene (human)	CEBPG (GeneCards)
Gene synonyms (human)
Gene (mouse)	Cebpg
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	bRTTGCRYAAYh
GC content	40.28%
Information content (bits; total / per base)	13.34 / 1.112
Data sources	ChIP-Seq
Aligned words	967

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (21)	0.976	0.992	0.945	0.981	0.967	0.98	4.776	5.3	731.569	1023.149
Mouse	1 (7)	0.931	0.933	0.867	0.872	0.852	0.853	2.665	2.688	513.538	589.222

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 8 experiments	median	0.978	0.96	0.964	0.943	0.86	0.86
Overall, 8 experiments	best	0.999	0.999	0.995	0.992	0.988	0.983
Methyl HT-SELEX, 2 experiments	median	0.989	0.98	0.981	0.97	0.95	0.938
Methyl HT-SELEX, 2 experiments	best	0.997	0.995	0.995	0.992	0.988	0.983
Non-Methyl HT-SELEX, 6 experiments	median	0.95	0.94	0.846	0.836	0.723	0.741
Non-Methyl HT-SELEX, 6 experiments	best	0.999	0.999	0.991	0.985	0.983	0.974

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	9.771	12.093	0.309	0.205

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	C/EBP-related {1.1.8} (TFClass)
TF subfamily	CEBP {1.1.8.1} (TFClass)
TFClass ID	TFClass: 1.1.8.1.3
HGNC	HGNC:1837
MGI	MGI:104982
EntrezGene (human)	GeneID:1054 (SSTAR profile)
EntrezGene (mouse)	GeneID:12611 (SSTAR profile)
UniProt ID (human)	CEBPG_HUMAN
UniProt ID (mouse)	CEBPG_MOUSE
UniProt AC (human)	P53567 (TFClass)
UniProt AC (mouse)	P53568 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 1 mouse
HT-SELEX	6
Methyl-HT-SELEX	2

PCM	CEBPG.H12INVITRO.0.P.B.pcm
PWM	CEBPG.H12INVITRO.0.P.B.pwm
PFM	CEBPG.H12INVITRO.0.P.B.pfm
Alignment	CEBPG.H12INVITRO.0.P.B.words.tsv
Threshold to P-value map	CEBPG.H12INVITRO.0.P.B.thr
Motif in other formats
JASPAR format	CEBPG.H12INVITRO.0.P.B_jaspar_format.txt
MEME format	CEBPG.H12INVITRO.0.P.B_meme_format.meme
Transfac format	CEBPG.H12INVITRO.0.P.B_transfac_format.txt
Homer format	CEBPG.H12INVITRO.0.P.B_homer_format_0.001.txt CEBPG.H12INVITRO.0.P.B_homer_format_0.0005.txt CEBPG.H12INVITRO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	136.0	142.0	322.0	367.0
02	656.0	62.0	236.0	13.0
03	2.0	3.0	1.0	961.0
04	3.0	1.0	1.0	962.0
05	22.0	0.0	915.0	30.0
06	3.0	961.0	3.0	0.0
07	376.0	41.0	466.0	84.0
08	90.0	513.0	3.0	361.0
09	765.0	196.0	2.0	4.0
10	955.0	1.0	6.0	5.0
11	19.0	369.0	75.0	504.0
12	352.0	284.0	71.0	260.0

PFM

	A	C	G	T
01	0.141	0.147	0.333	0.38
02	0.678	0.064	0.244	0.013
03	0.002	0.003	0.001	0.994
04	0.003	0.001	0.001	0.995
05	0.023	0.0	0.946	0.031
06	0.003	0.994	0.003	0.0
07	0.389	0.042	0.482	0.087
08	0.093	0.531	0.003	0.373
09	0.791	0.203	0.002	0.004
10	0.988	0.001	0.006	0.005
11	0.02	0.382	0.078	0.521
12	0.364	0.294	0.073	0.269

PWM

	A	C	G	T
01	-0.57	-0.527	0.285	0.415
02	0.994	-1.341	-0.024	-2.806
03	-4.182	-3.943	-4.495	1.375
04	-3.943	-4.495	-4.495	1.376
05	-2.329	-4.954	1.326	-2.038
06	-3.943	1.375	-3.943	-4.954
07	0.439	-1.74	0.653	-1.044
08	-0.976	0.749	-3.943	0.399
09	1.147	-0.208	-4.182	-3.751
10	1.369	-4.495	-3.451	-3.59
11	-2.464	0.42	-1.155	0.731
12	0.374	0.16	-1.208	0.072

Standard thresholds

P-value	Threshold
0.001	3.20362
0.0005	4.42222
0.0001	7.06242