CEBPG.H12CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CEBPG.H12CORE.0.P.B
Gene (human)	CEBPG (GeneCards)
Gene synonyms (human)
Gene (mouse)	Cebpg
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	bRTTGCRYAAYh
GC content	39.78%
Information content (bits; total / per base)	14.169 / 1.181
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (21)	0.977	0.99	0.94	0.975	0.971	0.982	4.79	5.302	781.229	1023.149
Mouse	1 (7)	0.955	0.956	0.918	0.922	0.904	0.906	3.427	3.455	585.268	667.42

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 8 experiments	median	0.978	0.96	0.965	0.945	0.86	0.86
Overall, 8 experiments	best	0.999	0.998	0.995	0.991	0.989	0.984
Methyl HT-SELEX, 2 experiments	median	0.989	0.979	0.982	0.971	0.951	0.939
Methyl HT-SELEX, 2 experiments	best	0.997	0.994	0.995	0.991	0.989	0.984
Non-Methyl HT-SELEX, 6 experiments	median	0.951	0.941	0.844	0.836	0.718	0.738
Non-Methyl HT-SELEX, 6 experiments	best	0.999	0.998	0.99	0.984	0.982	0.973

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	20.732	16.173	0.31	0.205

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	C/EBP-related {1.1.8} (TFClass)
TF subfamily	CEBP {1.1.8.1} (TFClass)
TFClass ID	TFClass: 1.1.8.1.3
HGNC	HGNC:1837
MGI	MGI:104982
EntrezGene (human)	GeneID:1054 (SSTAR profile)
EntrezGene (mouse)	GeneID:12611 (SSTAR profile)
UniProt ID (human)	CEBPG_HUMAN
UniProt ID (mouse)	CEBPG_MOUSE
UniProt AC (human)	P53567 (TFClass)
UniProt AC (mouse)	P53568 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 1 mouse
HT-SELEX	6
Methyl-HT-SELEX	2

PCM	CEBPG.H12CORE.0.P.B.pcm
PWM	CEBPG.H12CORE.0.P.B.pwm
PFM	CEBPG.H12CORE.0.P.B.pfm
Alignment	CEBPG.H12CORE.0.P.B.words.tsv
Threshold to P-value map	CEBPG.H12CORE.0.P.B.thr
Motif in other formats
JASPAR format	CEBPG.H12CORE.0.P.B_jaspar_format.txt
MEME format	CEBPG.H12CORE.0.P.B_meme_format.meme
Transfac format	CEBPG.H12CORE.0.P.B_transfac_format.txt
Homer format	CEBPG.H12CORE.0.P.B_homer_format_0.001.txt CEBPG.H12CORE.0.P.B_homer_format_0.0005.txt CEBPG.H12CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	84.0	137.0	315.0	464.0
02	738.0	54.0	207.0	1.0
03	0.0	0.0	0.0	1000.0
04	0.0	1.0	0.0	999.0
05	27.0	0.0	953.0	20.0
06	0.0	994.0	4.0	2.0
07	459.0	18.0	490.0	33.0
08	57.0	421.0	0.0	522.0
09	602.0	397.0	0.0	1.0
10	998.0	1.0	1.0	0.0
11	8.0	325.0	78.0	589.0
12	338.0	316.0	62.0	284.0

PFM

	A	C	G	T
01	0.084	0.137	0.315	0.464
02	0.738	0.054	0.207	0.001
03	0.0	0.0	0.0	1.0
04	0.0	0.001	0.0	0.999
05	0.027	0.0	0.953	0.02
06	0.0	0.994	0.004	0.002
07	0.459	0.018	0.49	0.033
08	0.057	0.421	0.0	0.522
09	0.602	0.397	0.0	0.001
10	0.998	0.001	0.001	0.0
11	0.008	0.325	0.078	0.589
12	0.338	0.316	0.062	0.284

PWM

	A	C	G	T
01	-1.077	-0.596	0.23	0.615
02	1.078	-1.508	-0.187	-4.525
03	-4.982	-4.982	-4.982	1.381
04	-4.982	-4.525	-4.982	1.38
05	-2.171	-4.982	1.333	-2.45
06	-4.982	1.375	-3.783	-4.213
07	0.604	-2.546	0.67	-1.981
08	-1.455	0.518	-4.982	0.733
09	0.875	0.46	-4.982	-4.525
10	1.379	-4.525	-4.525	-4.982
11	-3.253	0.261	-1.15	0.853
12	0.3	0.233	-1.374	0.127

Standard thresholds

P-value	Threshold
0.001	2.418815
0.0005	3.81511
0.0001	6.700335