MotifCEBPE.H12INVIVO.0.P.B
Gene (human)CEBPE
(GeneCards)
Gene synonyms (human)
Gene (mouse)Cebpe
Gene synonyms (mouse)Gm294
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusdvTKddGCAAb
GC content44.37%
Information content (bits; total / per base)10.836 / 0.985
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 3 (21) 0.928 0.938 0.849 0.868 0.865 0.874 2.593 2.694 274.027 323.481

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.98 0.965 0.96 0.943 0.858 0.857
best 0.996 0.994 0.995 0.991 0.993 0.989
Methyl HT-SELEX, 2 experiments median 0.961 0.933 0.933 0.904 0.844 0.834
best 0.975 0.956 0.97 0.947 0.945 0.921
Non-Methyl HT-SELEX, 4 experiments median 0.987 0.977 0.967 0.957 0.874 0.88
best 0.996 0.994 0.995 0.991 0.993 0.989

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.913 0.79 0.906 0.644
batch 2 0.878 0.724 0.873 0.662
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyC/EBP-related {1.1.8} (TFClass)
TF subfamilyCEBP {1.1.8.1} (TFClass)
TFClass IDTFClass: 1.1.8.1.5
HGNCHGNC:1836
MGIMGI:103572
EntrezGene (human)GeneID:1053
(SSTAR profile)
EntrezGene (mouse)GeneID:110794
(SSTAR profile)
UniProt ID (human)CEBPE_HUMAN
UniProt ID (mouse)CEBPE_MOUSE
UniProt AC (human)Q15744
(TFClass)
UniProt AC (mouse)Q6PZD9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 3 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
01225.0126.0335.0314.0
02313.0230.0427.030.0
035.010.02.0983.0
042.01.0478.0519.0
05265.023.0453.0259.0
06186.0105.0273.0436.0
070.03.0994.03.0
08162.0792.03.043.0
09974.026.00.00.0
10994.01.05.00.0
1129.0354.0240.0377.0
PFM
ACGT
010.2250.1260.3350.314
020.3130.230.4270.03
030.0050.010.0020.983
040.0020.0010.4780.519
050.2650.0230.4530.259
060.1860.1050.2730.436
070.00.0030.9940.003
080.1620.7920.0030.043
090.9740.0260.00.0
100.9940.0010.0050.0
110.0290.3540.240.377
PWM
ACGT
01-0.105-0.6780.2910.227
020.223-0.0830.532-2.071
03-3.622-3.066-4.2131.364
04-4.213-4.5250.6450.727
050.058-2.320.5910.035
06-0.293-0.8580.0870.553
07-4.982-3.9751.375-3.975
08-0.431.148-3.975-1.728
091.355-2.206-4.982-4.982
101.375-4.525-3.622-4.982
11-2.1030.346-0.0410.408
Standard thresholds
P-value Threshold
0.001 4.22336
0.0005 5.600295
0.0001 7.86655