MotifCEBPD.H12INVIVO.1.SM.B
Gene (human)CEBPD
(GeneCards)
Gene synonyms (human)
Gene (mouse)Cebpd
Gene synonyms (mouse)Crp3
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length13
ConsensusndRTTGCGhAAbn
GC content44.66%
Information content (bits; total / per base)13.187 / 1.014
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9828

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (14) 0.867 0.98 0.823 0.95 0.813 0.956 3.058 4.022 355.569 753.319
Mouse 7 (49) 0.966 0.972 0.926 0.943 0.904 0.921 3.261 3.419 423.481 530.481

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.996 0.992 0.993 0.989 0.963 0.958
best 0.997 0.995 0.994 0.991 0.986 0.98
Methyl HT-SELEX, 1 experiments median 0.997 0.994 0.994 0.991 0.986 0.98
best 0.997 0.994 0.994 0.991 0.986 0.98
Non-Methyl HT-SELEX, 3 experiments median 0.995 0.991 0.992 0.986 0.944 0.943
best 0.997 0.995 0.994 0.991 0.981 0.973
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyC/EBP-related {1.1.8} (TFClass)
TF subfamilyCEBP {1.1.8.1} (TFClass)
TFClass IDTFClass: 1.1.8.1.4
HGNCHGNC:1835
MGIMGI:103573
EntrezGene (human)GeneID:1052
(SSTAR profile)
EntrezGene (mouse)GeneID:12609
(SSTAR profile)
UniProt ID (human)CEBPD_HUMAN
UniProt ID (mouse)CEBPD_MOUSE
UniProt AC (human)P49716
(TFClass)
UniProt AC (mouse)Q00322
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 7 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012388.252113.252997.252329.25
021702.751189.753422.753512.75
034817.0633.04338.040.0
0413.029.037.09749.0
0531.010.026.09761.0
06750.011.09027.040.0
0731.09653.079.065.0
08427.022.09292.087.0
091908.03110.0150.04660.0
107952.01492.0173.0211.0
119256.0110.0216.0246.0
12528.52512.51825.54961.5
132431.02364.02227.02806.0
PFM
ACGT
010.2430.2150.3050.237
020.1730.1210.3480.357
030.490.0640.4410.004
040.0010.0030.0040.992
050.0030.0010.0030.993
060.0760.0010.9180.004
070.0030.9820.0080.007
080.0430.0020.9450.009
090.1940.3160.0150.474
100.8090.1520.0180.021
110.9420.0110.0220.025
120.0540.2560.1860.505
130.2470.2410.2270.286
PWM
ACGT
01-0.028-0.1510.199-0.053
02-0.366-0.7240.3310.357
030.673-1.3540.568-4.063
04-5.08-4.364-4.1361.378
05-4.302-5.298-4.4651.379
06-1.184-5.221.301-4.063
07-4.3021.368-3.41-3.598
08-1.745-4.6171.33-3.316
09-0.2530.235-2.7820.64
101.174-0.498-2.641-2.445
111.326-3.086-2.422-2.293
12-1.5330.022-0.2970.702
13-0.011-0.039-0.0980.133
Standard thresholds
P-value Threshold
0.001 3.20441
0.0005 4.45581
0.0001 6.958035