CEBPD.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CEBPD.H12INVIVO.0.P.B
Gene (human)	CEBPD (GeneCards)
Gene synonyms (human)
Gene (mouse)	Cebpd
Gene synonyms (mouse)	Crp3
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	dRTTKCdhMAY
GC content	39.46%
Information content (bits; total / per base)	10.36 / 0.942
Data sources	ChIP-Seq
Aligned words	1050

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (14)	0.837	0.977	0.786	0.941	0.815	0.967	3.212	4.434	341.3	743.046
Mouse	7 (49)	0.971	0.978	0.931	0.949	0.934	0.947	3.601	3.83	432.824	549.854

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.993	0.987	0.99	0.983	0.966	0.96
Overall, 4 experiments	best	0.995	0.992	0.993	0.988	0.983	0.974
Methyl HT-SELEX, 1 experiments	median	0.993	0.987	0.99	0.983	0.983	0.974
Methyl HT-SELEX, 1 experiments	best	0.993	0.987	0.99	0.983	0.983	0.974
Non-Methyl HT-SELEX, 3 experiments	median	0.993	0.987	0.99	0.982	0.951	0.948
Non-Methyl HT-SELEX, 3 experiments	best	0.995	0.992	0.993	0.988	0.982	0.972

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	C/EBP-related {1.1.8} (TFClass)
TF subfamily	CEBP {1.1.8.1} (TFClass)
TFClass ID	TFClass: 1.1.8.1.4
HGNC	HGNC:1835
MGI	MGI:103573
EntrezGene (human)	GeneID:1052 (SSTAR profile)
EntrezGene (mouse)	GeneID:12609 (SSTAR profile)
UniProt ID (human)	CEBPD_HUMAN
UniProt ID (mouse)	CEBPD_MOUSE
UniProt AC (human)	P49716 (TFClass)
UniProt AC (mouse)	Q00322 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 7 mouse
HT-SELEX	3
Methyl-HT-SELEX	1

PCM	CEBPD.H12INVIVO.0.P.B.pcm
PWM	CEBPD.H12INVIVO.0.P.B.pwm
PFM	CEBPD.H12INVIVO.0.P.B.pfm
Alignment	CEBPD.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	CEBPD.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	CEBPD.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	CEBPD.H12INVIVO.0.P.B_meme_format.meme
Transfac format	CEBPD.H12INVIVO.0.P.B_transfac_format.txt
Homer format	CEBPD.H12INVIVO.0.P.B_homer_format_0.001.txt CEBPD.H12INVIVO.0.P.B_homer_format_0.0005.txt CEBPD.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	214.0	144.0	348.0	344.0
02	631.0	137.0	246.0	36.0
03	11.0	13.0	9.0	1017.0
04	10.0	6.0	29.0	1005.0
05	90.0	17.0	826.0	117.0
06	13.0	1024.0	7.0	6.0
07	524.0	123.0	239.0	164.0
08	171.0	469.0	21.0	389.0
09	681.0	337.0	14.0	18.0
10	987.0	34.0	15.0	14.0
11	37.0	379.0	121.0	513.0

PFM

	A	C	G	T
01	0.204	0.137	0.331	0.328
02	0.601	0.13	0.234	0.034
03	0.01	0.012	0.009	0.969
04	0.01	0.006	0.028	0.957
05	0.086	0.016	0.787	0.111
06	0.012	0.975	0.007	0.006
07	0.499	0.117	0.228	0.156
08	0.163	0.447	0.02	0.37
09	0.649	0.321	0.013	0.017
10	0.94	0.032	0.014	0.013
11	0.035	0.361	0.115	0.489

PWM

	A	C	G	T
01	-0.203	-0.595	0.28	0.269
02	0.873	-0.644	-0.064	-1.946
03	-3.032	-2.886	-3.203	1.349
04	-3.114	-3.531	-2.151	1.338
05	-1.058	-2.646	1.142	-0.8
06	-2.886	1.356	-3.409	-3.531
07	0.688	-0.751	-0.093	-0.466
08	-0.425	0.577	-2.453	0.391
09	0.949	0.248	-2.821	-2.594
10	1.32	-2.001	-2.759	-2.821
11	-1.92	0.365	-0.767	0.667

Standard thresholds

P-value	Threshold
0.001	4.610545
0.0005	5.523095
0.0001	7.46146