Motif | CEBPA.H12RSNP.0.P.B |
Gene (human) | CEBPA (GeneCards) |
Gene synonyms (human) | CEBP |
Gene (mouse) | Cebpa |
Gene synonyms (mouse) | Cebp |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | CEBPA.H12RSNP.0.P.B |
Gene (human) | CEBPA (GeneCards) |
Gene synonyms (human) | CEBP |
Gene (mouse) | Cebpa |
Gene synonyms (mouse) | Cebp |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | dRTTRYGCAAYv |
GC content | 41.91% |
Information content (bits; total / per base) | 12.423 / 1.035 |
Data sources | ChIP-Seq |
Aligned words | 1004 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 25 (142) | 0.947 | 0.978 | 0.894 | 0.946 | 0.929 | 0.966 | 3.974 | 4.766 | 394.789 | 941.42 |
Mouse | 83 (494) | 0.971 | 0.992 | 0.932 | 0.983 | 0.928 | 0.974 | 3.533 | 4.747 | 471.701 | 857.638 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 44.055 | 56.339 | 0.422 | 0.388 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | C/EBP-related {1.1.8} (TFClass) |
TF subfamily | CEBP {1.1.8.1} (TFClass) |
TFClass ID | TFClass: 1.1.8.1.1 |
HGNC | HGNC:1833 |
MGI | MGI:99480 |
EntrezGene (human) | GeneID:1050 (SSTAR profile) |
EntrezGene (mouse) | GeneID:12606 (SSTAR profile) |
UniProt ID (human) | CEBPA_HUMAN |
UniProt ID (mouse) | CEBPA_MOUSE |
UniProt AC (human) | P49715 (TFClass) |
UniProt AC (mouse) | P53566 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 25 human, 83 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | CEBPA.H12RSNP.0.P.B.pcm |
PWM | CEBPA.H12RSNP.0.P.B.pwm |
PFM | CEBPA.H12RSNP.0.P.B.pfm |
Alignment | CEBPA.H12RSNP.0.P.B.words.tsv |
Threshold to P-value map | CEBPA.H12RSNP.0.P.B.thr |
Motif in other formats | |
JASPAR format | CEBPA.H12RSNP.0.P.B_jaspar_format.txt |
MEME format | CEBPA.H12RSNP.0.P.B_meme_format.meme |
Transfac format | CEBPA.H12RSNP.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 285.0 | 77.0 | 353.0 | 289.0 |
02 | 426.0 | 105.0 | 443.0 | 30.0 |
03 | 2.0 | 3.0 | 15.0 | 984.0 |
04 | 13.0 | 0.0 | 264.0 | 727.0 |
05 | 337.0 | 5.0 | 498.0 | 164.0 |
06 | 65.0 | 477.0 | 53.0 | 409.0 |
07 | 4.0 | 4.0 | 979.0 | 17.0 |
08 | 60.0 | 912.0 | 11.0 | 21.0 |
09 | 996.0 | 7.0 | 0.0 | 1.0 |
10 | 1001.0 | 0.0 | 2.0 | 1.0 |
11 | 16.0 | 258.0 | 111.0 | 619.0 |
12 | 402.0 | 316.0 | 156.0 | 130.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.284 | 0.077 | 0.352 | 0.288 |
02 | 0.424 | 0.105 | 0.441 | 0.03 |
03 | 0.002 | 0.003 | 0.015 | 0.98 |
04 | 0.013 | 0.0 | 0.263 | 0.724 |
05 | 0.336 | 0.005 | 0.496 | 0.163 |
06 | 0.065 | 0.475 | 0.053 | 0.407 |
07 | 0.004 | 0.004 | 0.975 | 0.017 |
08 | 0.06 | 0.908 | 0.011 | 0.021 |
09 | 0.992 | 0.007 | 0.0 | 0.001 |
10 | 0.997 | 0.0 | 0.002 | 0.001 |
11 | 0.016 | 0.257 | 0.111 | 0.617 |
12 | 0.4 | 0.315 | 0.155 | 0.129 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.126 | -1.166 | 0.339 | 0.14 |
02 | 0.526 | -0.862 | 0.565 | -2.075 |
03 | -4.216 | -3.979 | -2.715 | 1.361 |
04 | -2.843 | -4.985 | 0.05 | 1.059 |
05 | 0.293 | -3.626 | 0.682 | -0.422 |
06 | -1.332 | 0.639 | -1.53 | 0.486 |
07 | -3.787 | -3.787 | 1.356 | -2.602 |
08 | -1.41 | 1.285 | -2.989 | -2.409 |
09 | 1.373 | -3.366 | -4.985 | -4.529 |
10 | 1.378 | -4.985 | -4.216 | -4.529 |
11 | -2.657 | 0.027 | -0.807 | 0.899 |
12 | 0.468 | 0.229 | -0.471 | -0.652 |
P-value | Threshold |
---|---|
0.001 | 3.75332 |
0.0005 | 4.89334 |
0.0001 | 7.30041 |