MotifCEBPA.H12RSNP.0.P.B
Gene (human)CEBPA
(GeneCards)
Gene synonyms (human)CEBP
Gene (mouse)Cebpa
Gene synonyms (mouse)Cebp
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusdRTTRYGCAAYv
GC content41.91%
Information content (bits; total / per base)12.423 / 1.035
Data sourcesChIP-Seq
Aligned words1004

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 25 (142) 0.947 0.978 0.894 0.946 0.929 0.966 3.974 4.766 394.789 941.42
Mouse 83 (494) 0.971 0.992 0.932 0.983 0.928 0.974 3.533 4.747 471.701 857.638

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 44.055 56.339 0.422 0.388
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyC/EBP-related {1.1.8} (TFClass)
TF subfamilyCEBP {1.1.8.1} (TFClass)
TFClass IDTFClass: 1.1.8.1.1
HGNCHGNC:1833
MGIMGI:99480
EntrezGene (human)GeneID:1050
(SSTAR profile)
EntrezGene (mouse)GeneID:12606
(SSTAR profile)
UniProt ID (human)CEBPA_HUMAN
UniProt ID (mouse)CEBPA_MOUSE
UniProt AC (human)P49715
(TFClass)
UniProt AC (mouse)P53566
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 25 human, 83 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01285.077.0353.0289.0
02426.0105.0443.030.0
032.03.015.0984.0
0413.00.0264.0727.0
05337.05.0498.0164.0
0665.0477.053.0409.0
074.04.0979.017.0
0860.0912.011.021.0
09996.07.00.01.0
101001.00.02.01.0
1116.0258.0111.0619.0
12402.0316.0156.0130.0
PFM
ACGT
010.2840.0770.3520.288
020.4240.1050.4410.03
030.0020.0030.0150.98
040.0130.00.2630.724
050.3360.0050.4960.163
060.0650.4750.0530.407
070.0040.0040.9750.017
080.060.9080.0110.021
090.9920.0070.00.001
100.9970.00.0020.001
110.0160.2570.1110.617
120.40.3150.1550.129
PWM
ACGT
010.126-1.1660.3390.14
020.526-0.8620.565-2.075
03-4.216-3.979-2.7151.361
04-2.843-4.9850.051.059
050.293-3.6260.682-0.422
06-1.3320.639-1.530.486
07-3.787-3.7871.356-2.602
08-1.411.285-2.989-2.409
091.373-3.366-4.985-4.529
101.378-4.985-4.216-4.529
11-2.6570.027-0.8070.899
120.4680.229-0.471-0.652
Standard thresholds
P-value Threshold
0.001 3.75332
0.0005 4.89334
0.0001 7.30041