CEBPA.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CEBPA.H12INVITRO.0.P.D
Gene (human)	CEBPA (GeneCards)
Gene synonyms (human)	CEBP
Gene (mouse)	Cebpa
Gene synonyms (mouse)	Cebp
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	12
Consensus	dRTTRYGCAAYv
GC content	41.91%
Information content (bits; total / per base)	12.423 / 1.035
Data sources	ChIP-Seq
Aligned words	1004

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	25 (142)	0.947	0.978	0.894	0.946	0.929	0.966	3.974	4.766	394.789	941.42
Mouse	83 (494)	0.971	0.992	0.932	0.983	0.928	0.974	3.533	4.747	471.701	857.638

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	44.055	56.339	0.422	0.388

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	C/EBP-related {1.1.8} (TFClass)
TF subfamily	CEBP {1.1.8.1} (TFClass)
TFClass ID	TFClass: 1.1.8.1.1
HGNC	HGNC:1833
MGI	MGI:99480
EntrezGene (human)	GeneID:1050 (SSTAR profile)
EntrezGene (mouse)	GeneID:12606 (SSTAR profile)
UniProt ID (human)	CEBPA_HUMAN
UniProt ID (mouse)	CEBPA_MOUSE
UniProt AC (human)	P49715 (TFClass)
UniProt AC (mouse)	P53566 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	25 human, 83 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	CEBPA.H12INVITRO.0.P.D.pcm
PWM	CEBPA.H12INVITRO.0.P.D.pwm
PFM	CEBPA.H12INVITRO.0.P.D.pfm
Alignment	CEBPA.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	CEBPA.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	CEBPA.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	CEBPA.H12INVITRO.0.P.D_meme_format.meme
Transfac format	CEBPA.H12INVITRO.0.P.D_transfac_format.txt
Homer format	CEBPA.H12INVITRO.0.P.D_homer_format_0.001.txt CEBPA.H12INVITRO.0.P.D_homer_format_0.0005.txt CEBPA.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	285.0	77.0	353.0	289.0
02	426.0	105.0	443.0	30.0
03	2.0	3.0	15.0	984.0
04	13.0	0.0	264.0	727.0
05	337.0	5.0	498.0	164.0
06	65.0	477.0	53.0	409.0
07	4.0	4.0	979.0	17.0
08	60.0	912.0	11.0	21.0
09	996.0	7.0	0.0	1.0
10	1001.0	0.0	2.0	1.0
11	16.0	258.0	111.0	619.0
12	402.0	316.0	156.0	130.0

PFM

	A	C	G	T
01	0.284	0.077	0.352	0.288
02	0.424	0.105	0.441	0.03
03	0.002	0.003	0.015	0.98
04	0.013	0.0	0.263	0.724
05	0.336	0.005	0.496	0.163
06	0.065	0.475	0.053	0.407
07	0.004	0.004	0.975	0.017
08	0.06	0.908	0.011	0.021
09	0.992	0.007	0.0	0.001
10	0.997	0.0	0.002	0.001
11	0.016	0.257	0.111	0.617
12	0.4	0.315	0.155	0.129

PWM

	A	C	G	T
01	0.126	-1.166	0.339	0.14
02	0.526	-0.862	0.565	-2.075
03	-4.216	-3.979	-2.715	1.361
04	-2.843	-4.985	0.05	1.059
05	0.293	-3.626	0.682	-0.422
06	-1.332	0.639	-1.53	0.486
07	-3.787	-3.787	1.356	-2.602
08	-1.41	1.285	-2.989	-2.409
09	1.373	-3.366	-4.985	-4.529
10	1.378	-4.985	-4.216	-4.529
11	-2.657	0.027	-0.807	0.899
12	0.468	0.229	-0.471	-0.652

Standard thresholds

P-value	Threshold
0.001	3.75332
0.0005	4.89334
0.0001	7.30041