MotifCDX4.H12INVIVO.1.M.D
Gene (human)CDX4
(GeneCards)
Gene synonyms (human)
Gene (mouse)Cdx4
Gene synonyms (mouse)Cdx-4
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length13
ConsensusndTTTACGACvbn
GC content43.1%
Information content (bits; total / per base)14.544 / 1.119
Data sourcesMethyl-HT-SELEX
Aligned words6856

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.985 0.979 0.924 0.917 0.831 0.837
best 0.989 0.98 0.98 0.969 0.96 0.945
Methyl HT-SELEX, 1 experiments median 0.982 0.977 0.868 0.865 0.701 0.729
best 0.982 0.977 0.868 0.865 0.701 0.729
Non-Methyl HT-SELEX, 1 experiments median 0.989 0.98 0.98 0.969 0.96 0.945
best 0.989 0.98 0.98 0.969 0.96 0.945

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.724 0.529 0.648 0.429
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyCDX {3.1.1.9} (TFClass)
TFClass IDTFClass: 3.1.1.9.3
HGNCHGNC:1808
MGIMGI:88362
EntrezGene (human)GeneID:1046
(SSTAR profile)
EntrezGene (mouse)GeneID:12592
(SSTAR profile)
UniProt ID (human)CDX4_HUMAN
UniProt ID (mouse)CDX4_MOUSE
UniProt AC (human)O14627
(TFClass)
UniProt AC (mouse)Q07424
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011400.02078.02401.0977.0
021339.0584.01359.03574.0
0333.011.014.06798.0
040.00.00.06856.0
050.00.00.06856.0
066856.00.00.00.0
070.05427.02.01427.0
089.04.06511.0332.0
096543.015.0291.07.0
1026.05332.0322.01176.0
111081.03074.02199.0502.0
12598.253202.251335.251720.25
13901.02267.01989.01699.0
PFM
ACGT
010.2040.3030.350.143
020.1950.0850.1980.521
030.0050.0020.0020.992
040.00.00.01.0
050.00.00.01.0
061.00.00.00.0
070.00.7920.00.208
080.0010.0010.950.048
090.9540.0020.0420.001
100.0040.7780.0470.172
110.1580.4480.3210.073
120.0870.4670.1950.251
130.1310.3310.290.248
PWM
ACGT
01-0.2020.1920.337-0.561
02-0.247-1.074-0.2320.734
03-3.887-4.867-4.6621.377
04-6.656-6.656-6.6561.385
05-6.656-6.656-6.6561.385
061.385-6.656-6.656-6.656
07-6.6561.152-6.011-0.183
08-5.031-5.6221.334-1.636
091.339-4.602-1.767-5.228
10-4.1081.134-1.666-0.376
11-0.460.5840.249-1.225
12-1.050.624-0.2490.004
13-0.6420.2790.149-0.009
Standard thresholds
P-value Threshold
0.001 1.27996
0.0005 2.85226
0.0001 6.47536