MotifCDX1.H12INVIVO.0.M.D
Gene (human)CDX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Cdx1
Gene synonyms (mouse)Cdx-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensusnnTTTACGAYn
GC content36.52%
Information content (bits; total / per base)10.855 / 0.987
Data sourcesMethyl-HT-SELEX
Aligned words9752

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.974 0.956 0.948 0.925 0.867 0.848
best 0.998 0.996 0.996 0.994 0.989 0.985
Methyl HT-SELEX, 2 experiments median 0.992 0.988 0.979 0.971 0.933 0.925
best 0.998 0.996 0.996 0.994 0.989 0.985
Non-Methyl HT-SELEX, 4 experiments median 0.948 0.918 0.898 0.866 0.785 0.775
best 0.99 0.98 0.984 0.973 0.963 0.949

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.884 0.507 0.839 0.542
batch 2 0.823 0.666 0.759 0.507
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyCDX {3.1.1.9} (TFClass)
TFClass IDTFClass: 3.1.1.9.1
HGNCHGNC:1805
MGIMGI:88360
EntrezGene (human)GeneID:1044
(SSTAR profile)
EntrezGene (mouse)GeneID:12590
(SSTAR profile)
UniProt ID (human)CDX1_HUMAN
UniProt ID (mouse)CDX1_MOUSE
UniProt AC (human)P47902
(TFClass)
UniProt AC (mouse)P18111
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
012651.52280.52789.52030.5
022081.251865.252696.253109.25
03903.0144.0276.08429.0
0451.054.031.09616.0
05355.023.090.09284.0
069738.03.011.00.0
070.05588.01.04163.0
08126.012.08272.01342.0
097504.0120.01929.0199.0
10235.256218.251103.252195.25
112160.752672.752998.751919.75
PFM
ACGT
010.2720.2340.2860.208
020.2130.1910.2760.319
030.0930.0150.0280.864
040.0050.0060.0030.986
050.0360.0020.0090.952
060.9990.00.0010.0
070.00.5730.00.427
080.0130.0010.8480.138
090.7690.0120.1980.02
100.0240.6380.1130.225
110.2220.2740.3080.197
PWM
ACGT
010.084-0.0670.135-0.183
02-0.158-0.2670.1010.243
03-0.992-2.814-2.1711.24
04-3.824-3.769-4.2941.372
05-1.921-4.569-3.2751.336
061.384-6.133-5.212-6.969
07-6.9690.829-6.6070.535
08-2.946-5.141.221-0.596
091.124-2.993-0.234-2.495
10-2.330.936-0.792-0.105
11-0.1210.0920.207-0.239
Standard thresholds
P-value Threshold
0.001 4.38103
0.0005 5.524335
0.0001 7.67941