| Motif | BSH.H12RSNP.0.SM.D |
| Gene (human) | BSX (GeneCards) |
| Gene synonyms (human) | BSX1 |
| Gene (mouse) | Bsx |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | BSH.H12RSNP.0.SM.D |
| Gene (human) | BSX (GeneCards) |
| Gene synonyms (human) | BSX1 |
| Gene (mouse) | Bsx |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | nvYMATTAvbbn |
| GC content | 38.85% |
| Information content (bits; total / per base) | 9.983 / 0.832 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 8878 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.949 | 0.915 | 0.926 | 0.888 | 0.874 | 0.837 |
| best | 0.953 | 0.922 | 0.936 | 0.899 | 0.91 | 0.869 | |
| Methyl HT-SELEX, 1 experiments | median | 0.946 | 0.909 | 0.929 | 0.887 | 0.901 | 0.857 |
| best | 0.946 | 0.909 | 0.929 | 0.887 | 0.901 | 0.857 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.952 | 0.921 | 0.924 | 0.888 | 0.847 | 0.818 |
| best | 0.953 | 0.922 | 0.936 | 0.899 | 0.91 | 0.869 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | NK-related {3.1.2} (TFClass) |
| TF subfamily | BSX {3.1.2.3} (TFClass) |
| TFClass ID | TFClass: 3.1.2.3.1 |
| HGNC | HGNC:20450 |
| MGI | MGI:2669849 |
| EntrezGene (human) | GeneID:390259 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:244813 (SSTAR profile) |
| UniProt ID (human) | BSH_HUMAN |
| UniProt ID (mouse) | BSH_MOUSE |
| UniProt AC (human) | Q3C1V8 (TFClass) |
| UniProt AC (mouse) | Q810B3 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 1 |
| PCM | BSH.H12RSNP.0.SM.D.pcm |
| PWM | BSH.H12RSNP.0.SM.D.pwm |
| PFM | BSH.H12RSNP.0.SM.D.pfm |
| Alignment | BSH.H12RSNP.0.SM.D.words.tsv |
| Threshold to P-value map | BSH.H12RSNP.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | BSH.H12RSNP.0.SM.D_jaspar_format.txt |
| MEME format | BSH.H12RSNP.0.SM.D_meme_format.meme |
| Transfac format | BSH.H12RSNP.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2867.5 | 2131.5 | 2464.5 | 1414.5 |
| 02 | 1607.75 | 3281.75 | 2846.75 | 1141.75 |
| 03 | 238.0 | 4625.0 | 123.0 | 3892.0 |
| 04 | 4133.0 | 2678.0 | 2063.0 | 4.0 |
| 05 | 8748.0 | 0.0 | 130.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 8878.0 |
| 07 | 0.0 | 0.0 | 0.0 | 8878.0 |
| 08 | 8878.0 | 0.0 | 0.0 | 0.0 |
| 09 | 4012.0 | 1751.0 | 2396.0 | 719.0 |
| 10 | 430.0 | 4911.0 | 1969.0 | 1568.0 |
| 11 | 1231.0 | 2042.0 | 3433.0 | 2172.0 |
| 12 | 2163.25 | 2369.25 | 2173.25 | 2172.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.323 | 0.24 | 0.278 | 0.159 |
| 02 | 0.181 | 0.37 | 0.321 | 0.129 |
| 03 | 0.027 | 0.521 | 0.014 | 0.438 |
| 04 | 0.466 | 0.302 | 0.232 | 0.0 |
| 05 | 0.985 | 0.0 | 0.015 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 1.0 | 0.0 | 0.0 | 0.0 |
| 09 | 0.452 | 0.197 | 0.27 | 0.081 |
| 10 | 0.048 | 0.553 | 0.222 | 0.177 |
| 11 | 0.139 | 0.23 | 0.387 | 0.245 |
| 12 | 0.244 | 0.267 | 0.245 | 0.245 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.256 | -0.04 | 0.105 | -0.45 |
| 02 | -0.322 | 0.391 | 0.249 | -0.664 |
| 03 | -2.224 | 0.734 | -2.876 | 0.561 |
| 04 | 0.621 | 0.188 | -0.073 | -5.87 |
| 05 | 1.371 | -6.885 | -2.821 | -6.885 |
| 06 | -6.885 | -6.885 | -6.885 | 1.386 |
| 07 | -6.885 | -6.885 | -6.885 | 1.386 |
| 08 | 1.386 | -6.885 | -6.885 | -6.885 |
| 09 | 0.592 | -0.237 | 0.076 | -1.125 |
| 10 | -1.637 | 0.794 | -0.12 | -0.347 |
| 11 | -0.589 | -0.083 | 0.436 | -0.022 |
| 12 | -0.026 | 0.065 | -0.021 | -0.021 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.197815 |
| 0.0005 | 6.313765 |
| 0.0001 | 7.58516 |