MotifBSH.H12INVITRO.0.SM.B
Gene (human)BSX
(GeneCards)
Gene synonyms (human)BSX1
Gene (mouse)Bsx
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusnvYMATTAvbbn
GC content38.85%
Information content (bits; total / per base)9.983 / 0.832
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words8878

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.949 0.915 0.926 0.888 0.874 0.837
best 0.953 0.922 0.936 0.899 0.91 0.869
Methyl HT-SELEX, 1 experiments median 0.946 0.909 0.929 0.887 0.901 0.857
best 0.946 0.909 0.929 0.887 0.901 0.857
Non-Methyl HT-SELEX, 3 experiments median 0.952 0.921 0.924 0.888 0.847 0.818
best 0.953 0.922 0.936 0.899 0.91 0.869
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyBSX {3.1.2.3} (TFClass)
TFClass IDTFClass: 3.1.2.3.1
HGNCHGNC:20450
MGIMGI:2669849
EntrezGene (human)GeneID:390259
(SSTAR profile)
EntrezGene (mouse)GeneID:244813
(SSTAR profile)
UniProt ID (human)BSH_HUMAN
UniProt ID (mouse)BSH_MOUSE
UniProt AC (human)Q3C1V8
(TFClass)
UniProt AC (mouse)Q810B3
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012867.52131.52464.51414.5
021607.753281.752846.751141.75
03238.04625.0123.03892.0
044133.02678.02063.04.0
058748.00.0130.00.0
060.00.00.08878.0
070.00.00.08878.0
088878.00.00.00.0
094012.01751.02396.0719.0
10430.04911.01969.01568.0
111231.02042.03433.02172.0
122163.252369.252173.252172.25
PFM
ACGT
010.3230.240.2780.159
020.1810.370.3210.129
030.0270.5210.0140.438
040.4660.3020.2320.0
050.9850.00.0150.0
060.00.00.01.0
070.00.00.01.0
081.00.00.00.0
090.4520.1970.270.081
100.0480.5530.2220.177
110.1390.230.3870.245
120.2440.2670.2450.245
PWM
ACGT
010.256-0.040.105-0.45
02-0.3220.3910.249-0.664
03-2.2240.734-2.8760.561
040.6210.188-0.073-5.87
051.371-6.885-2.821-6.885
06-6.885-6.885-6.8851.386
07-6.885-6.885-6.8851.386
081.386-6.885-6.885-6.885
090.592-0.2370.076-1.125
10-1.6370.794-0.12-0.347
11-0.589-0.0830.436-0.022
12-0.0260.065-0.021-0.021
Standard thresholds
P-value Threshold
0.001 5.197815
0.0005 6.313765
0.0001 7.58516