BSH.H12INVITRO.0.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BSH.H12INVITRO.0.SM.B
Gene (human)	BSX (GeneCards)
Gene synonyms (human)	BSX1
Gene (mouse)	Bsx
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	nvYMATTAvbbn
GC content	38.85%
Information content (bits; total / per base)	9.983 / 0.832
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	8878

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.949	0.915	0.926	0.888	0.874	0.837
Overall, 4 experiments	best	0.953	0.922	0.936	0.899	0.91	0.869
Methyl HT-SELEX, 1 experiments	median	0.946	0.909	0.929	0.887	0.901	0.857
Methyl HT-SELEX, 1 experiments	best	0.946	0.909	0.929	0.887	0.901	0.857
Non-Methyl HT-SELEX, 3 experiments	median	0.952	0.921	0.924	0.888	0.847	0.818
Non-Methyl HT-SELEX, 3 experiments	best	0.953	0.922	0.936	0.899	0.91	0.869

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	NK-related {3.1.2} (TFClass)
TF subfamily	BSX {3.1.2.3} (TFClass)
TFClass ID	TFClass: 3.1.2.3.1
HGNC	HGNC:20450
MGI	MGI:2669849
EntrezGene (human)	GeneID:390259 (SSTAR profile)
EntrezGene (mouse)	GeneID:244813 (SSTAR profile)
UniProt ID (human)	BSH_HUMAN
UniProt ID (mouse)	BSH_MOUSE
UniProt AC (human)	Q3C1V8 (TFClass)
UniProt AC (mouse)	Q810B3 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	3
Methyl-HT-SELEX	1

PCM	BSH.H12INVITRO.0.SM.B.pcm
PWM	BSH.H12INVITRO.0.SM.B.pwm
PFM	BSH.H12INVITRO.0.SM.B.pfm
Alignment	BSH.H12INVITRO.0.SM.B.words.tsv
Threshold to P-value map	BSH.H12INVITRO.0.SM.B.thr
Motif in other formats
JASPAR format	BSH.H12INVITRO.0.SM.B_jaspar_format.txt
MEME format	BSH.H12INVITRO.0.SM.B_meme_format.meme
Transfac format	BSH.H12INVITRO.0.SM.B_transfac_format.txt
Homer format	BSH.H12INVITRO.0.SM.B_homer_format_0.001.txt BSH.H12INVITRO.0.SM.B_homer_format_0.0005.txt BSH.H12INVITRO.0.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2867.5	2131.5	2464.5	1414.5
02	1607.75	3281.75	2846.75	1141.75
03	238.0	4625.0	123.0	3892.0
04	4133.0	2678.0	2063.0	4.0
05	8748.0	0.0	130.0	0.0
06	0.0	0.0	0.0	8878.0
07	0.0	0.0	0.0	8878.0
08	8878.0	0.0	0.0	0.0
09	4012.0	1751.0	2396.0	719.0
10	430.0	4911.0	1969.0	1568.0
11	1231.0	2042.0	3433.0	2172.0
12	2163.25	2369.25	2173.25	2172.25

PFM

	A	C	G	T
01	0.323	0.24	0.278	0.159
02	0.181	0.37	0.321	0.129
03	0.027	0.521	0.014	0.438
04	0.466	0.302	0.232	0.0
05	0.985	0.0	0.015	0.0
06	0.0	0.0	0.0	1.0
07	0.0	0.0	0.0	1.0
08	1.0	0.0	0.0	0.0
09	0.452	0.197	0.27	0.081
10	0.048	0.553	0.222	0.177
11	0.139	0.23	0.387	0.245
12	0.244	0.267	0.245	0.245

PWM

	A	C	G	T
01	0.256	-0.04	0.105	-0.45
02	-0.322	0.391	0.249	-0.664
03	-2.224	0.734	-2.876	0.561
04	0.621	0.188	-0.073	-5.87
05	1.371	-6.885	-2.821	-6.885
06	-6.885	-6.885	-6.885	1.386
07	-6.885	-6.885	-6.885	1.386
08	1.386	-6.885	-6.885	-6.885
09	0.592	-0.237	0.076	-1.125
10	-1.637	0.794	-0.12	-0.347
11	-0.589	-0.083	0.436	-0.022
12	-0.026	0.065	-0.021	-0.021

Standard thresholds

P-value	Threshold
0.001	5.197815
0.0005	6.313765
0.0001	7.58516